Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00896 ATGGACGCTCTTCTTCTCAACGCACCCACTTCACACCCAATTCCTCGTAAATCTTTCCTTCCATCCCCTCCTTCCTTCTTCAATGGCTCCTCCATTTCCATTGATGACAATCGAAACAGAGTTAGACTTACCAGGCCTCCAGTCATCCTAGCCACGCTTTCAAAGCACGCCGTTGATATCCCTCCTAATTCTGTATCCAACACTTCGGTTTCGACTCCTGGAGATGCGTTGGCGCCTACCCCTTCGCCTCCTCGCAAAAGGGTATCGGCGGATTCTCTGCAGTTCCCGCCTGGCTATCTTGGCGCTGTTCCGGACCGTTCCGGTTCTGATAATGGCGAGGATAGTGTTGACGCCATGGAGTATTTGACTAGAATATTGGGTTCGAAGGTTTATGATGTGGCTATTGAATCGCCCTTGCAGCTTGCGCCGACGTTGTCTGAACGATTTGGGGTTAATATCTGGCTTAAGAGGGAGGACTTGCAGCCTGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAAAGAACAGTTGGAAAAAGGAGTTATATGCTCTTCAGCTGGAAATCATGCTCAAGGGGTTGCATTAGCGGCTAAGCGATTAAGATGTAATGCTGTTATTGCTATGCCAGTTACTACACCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCGACTGTTGTTCTTGTGGGAGATTCATACGATGAGGCACAAGCATATGCTAAAAAGCGGAGCGTAGAGGAAGGCCGCACATTCATTCCACCTTTTGATCACCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATAAAAGGTCCAGTGCATGCAATTTTTGTACCAGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTTAAAAGGGTTTCTCCTGAGGTAAAGATCATTGGGGTAGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCCAAAGAGTGATATTGGACAAGGCTGGAGGCTTTGCTGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACTTTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGTGATGCTATATGTGCCTCAATAAAGGATATGTTTGAGGAGAAGAGAAGCATCTTAGAACCTGCGGGTGCTCTTTCTCTTGCTGGAGCCGAGGCCTACTGCAAATATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGTATAGTTACTGAACTTGCCAATGTTGGTCGTGAGAAAGAGGCTGTGCTCGCAACTATATTGCCGGAGACACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGGCCTATGAACATTACAGAATTCAAGTACAGATATAGTTCTGAAAAAGAAGCTGTTGTTCTTTATAGTGTTGGTATCCATATGCCTTCTGAACTAGAGGAAATGAAGGATAGGATGGAATCGTCTCAGCTTCCAACTTATAATCTCACAAAGAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCAAATGTCGAAAATGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCGGGTGCTCTAGAGAAGTTCTTAGATGCTTTGAGTCCTCGCTGGAACATTACTTTGTTTCATTATCAAAGCAAGGGTGAAACTGGTGCAAATATATTAGTTGGGCTTCAGATTGAAAAACACGACATGGGCGAATTCCATGAACGTGCTCGAAGGGTCGGATACGATTACGTTGTGGTAACTGATGATGGTATCTTTCAGCTTCTGATGCATCATAGACCAACCCACAAGGCCATAGATCTCTTAAGTTGA 1893 44.37 MDALLLNAPTSHPIPRKSFLPSPPSFFNGSSISIDDNRNRVRLTRPPVILATLSKHAVDIPPNSVSNTSVSTPGDALAPTPSPPRKRVSADSLQFPPGYLGAVPDRSGSDNGEDSVDAMEYLTRILGSKVYDVAIESPLQLAPTLSERFGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLRCNAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSVEEGRTFIPPFDHPDVIAGQGTVGMEIVRQIKGPVHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRVILDKAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLSIVTELANVGREKEAVLATILPETPGSFKKFCELVGPMNITEFKYRYSSEKEAVVLYSVGIHMPSELEEMKDRMESSQLPTYNLTKNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDALSPRWNITLFHYQSKGETGANILVGLQIEKHDMGEFHERARRVGYDYVVVTDDGIFQLLMHHRPTHKAIDLLS* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16386530 16391796 + Chy8G155010.1 Chy08g00896 232682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00896 630 Gene3D Biosynthetic Threonine Deaminase; Domain 3 444 618 IPR038110 -
Chy08g00896 630 ProSiteProfiles ACT-like domain profile. 538 609 IPR001721 -
Chy08g00896 630 SUPERFAMILY ACT-like 525 617 IPR045865 -
Chy08g00896 630 MobiDBLite consensus disorder prediction 61 76 - -
Chy08g00896 630 CDD ACT_ThrD-I_1 444 527 - -
Chy08g00896 630 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 158 171 IPR000634 GO:0006520|GO:0030170
Chy08g00896 630 Gene3D - 170 261 IPR036052 -
Chy08g00896 630 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 52 617 - -
Chy08g00896 630 MobiDBLite consensus disorder prediction 61 91 - -
Chy08g00896 630 CDD ACT_ThrD-I_2 537 617 - -
Chy08g00896 630 Pfam C-terminal regulatory domain of Threonine dehydratase 529 615 IPR001721 -
Chy08g00896 630 Pfam C-terminal regulatory domain of Threonine dehydratase 435 524 IPR001721 -
Chy08g00896 630 CDD Thr-dehyd 122 426 - -
Chy08g00896 630 Pfam Pyridoxal-phosphate dependent enzyme 133 422 IPR001926 -
Chy08g00896 630 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 120 616 IPR005787 GO:0004794|GO:0009097
Chy08g00896 630 ProSiteProfiles ACT-like domain profile. 445 516 IPR001721 -
Chy08g00896 630 Gene3D - 138 416 IPR036052 -
Chy08g00896 630 PANTHER THREONINE DEHYDRATASE 52 617 - -
Chy08g00896 630 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 120 472 IPR036052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00892 Chy-Chr8:16337255 Chy08g00896 Chy-Chr8:16386530 1.96E-26 dispersed
Chy08g00893 Chy-Chr8:16338647 Chy08g00896 Chy-Chr8:16386530 2.24E-139 dispersed
Chy08g00894 Chy-Chr8:16351990 Chy08g00896 Chy-Chr8:16386530 0 dispersed
Chy08g00896 Chy-Chr8:16386530 Chy09g01212 Chy-Chr9:14246759 6.72E-30 dispersed
Chy08g00895 Chy-Chr8:16374665 Chy08g00896 Chy-Chr8:16386530 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00896 K01754 - csv:101205909 1217.22