Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00898 ATGCCCACCAATCCTTCTCCTTCAACACCACCATCACCACATCTATCCAAAACTTCTTTATCTCTCTGTAACCCAAACCCCTGTCTCCGCCCATTCAATTCCACCTCTCCCACCCAATTCCTCACCTCCCCACAACACCTTGTCTCCCTTTCAGAACCCCTTTTCGCTTCACGCTCTCTGAACACCTCTCTTTCTACCATTGCTTCCCCCTTCCACTTGCTTCGCCTATCCACTCGCTACGGTGACCCTGACCTCGCCAGAGCTGTTCATGCTCAGTTTCTCAAGCTCGAGGAAGATATCTTTCTGGGTAATGCTCTAATTTCGGCTTATCTCAAATTGGGACTTGTTCGAGATGCTGATAAAGTCTTTTCTGGCCTTTCTTGTCCTAATGTGGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCTGATTGGGAAGATGAGGCTATTGAGCTTTTCTTTGCGATGTTGGACTCAGGTATTGAGCCGAATGAATATACTTTTGTAGCAATTTTGACTGCTTGTATTCGAAATATGGATTATCAGTTAGGTTCGCAAGTTCATGGTATTGTCGTCAAATTAGGATTGTTGAGTTGTGTTTTCATTTGCAATGCACTTATGGGGTTGTATTGTAAGTGTGGGTTTTTGGACCTTGTACTTAGATTGTTCGAGGAAATGCCTGAGAGAGACATTACTTCATGGAATACTGTTATCTCGAGTTTGGTGAAGGAGTTCAAGTATGATGAAGCGTTTGATTACTTTCGTGGTATGCAGCTATGTAAAGGTCTCAGAGTGGATCATTTCTCTCTTTCTACTCTGTTGACTGCTTGTGTTGGTAGTGTTAAGCCAATGAAAGGCCAACAACTTCATGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGTGTGAGCAGTTCCCTTATTGGTTTCTATACTAAATGTGGGAGTGCAAATGATGTAACGGATCTGTTTGAGACAATGCCAATTAGAGATGTTATTACTTGGACAGGAATGATAACGTCTTACATGGAATTTGGAATGTTGGATTCGGCAGTCGAAGTTTTTAATAAGATGCCAAAGAGGAACTGCATCTCTTATAATGCTGTTTTGGCAGGACTTTCAAGGAATGACGATGGGTCTAGAGCTCTGGAACTTTTCATTGAAATGTTGGAGGAGGGTATAGAAATATCAGATTGCACATTGACTAGCATCATCACTGCTTGTGGGTTGCTCAAAAGTTTTAAAGTTAGCCAACAGATTCAAGGCTTCGTCATGAAATTCGGTATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTGTGGAAGGATGGAGGATGCTGAAAAGATATTTTATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAATGGGAAACTTAATGAAGCGATCTCTCTCTTCCACTCTGGTCAATCTGAAGGAGCCATTGTTATGGATGAAGTTATGTCGACATCAATAATCTCTCTATGTGGGAGTATAGGCTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGATACTGGGGTAGGAAATGCAACAGTTAGCATGTACTCAAAGTGCTGGAATATGGATCATGCGGTCCGTGTATTCAATACAATGAACATGCAAGACATCGTTTCTTGGAATGGTTTAGTTGCTGGTCATGTGCTTCATTGGCAGGGTGATAAAGCCTTGGGAATTTGGAAGAAGATGGAAAAGGCAGGAATAAAACCTGACAGTATTACGTTTGCTTTGATTATTTCAGCATACAAACACACTGAATTGAATTTAGTTGATAGTTGTCGCAGTTTATTTGTCTCTATGGAAACTGAACACAATATCAAACCCACTTTAGAGCATTATGCCTCCTTCATCAGTGTTTTGGGTCGTTGGGGTCTTCTTGAAGAAGCTGAACAAACAATCAGGAATATGCCTTTAGAACCGGATGTTTATGTATGGCGTGCTTTGCTTAATAGTTGTAGAATCAACAAAAATGAAAGGCTGGAAAAACTTGCTGCCAGAAACATACTGGCAGTGGAGCCAAAAGATCCATTATCTTACATACTTAAGTCGAATCTATACTCTGCATCAGGGAGATGGTACTATTCTGAAAAGGTGAGAGAGGATATGCGAGAGAAAGGGTTCCGGAAACACCCAAGTCAGAGCTGGATCATTCATGAGAACAAAATTCATTCATTTTATGCCAGAGACAGGTCTCATCCTCAAGGAAAAGACATTTACAGTGGATTAGAGATACTAATCTTAGAATGTTTAAAAGTTGGTTATGTTCCGGACACAAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCAAAAGAAGGAATTTTTGTTTTATCACAGTGGAAAATTAGGTGCAACTTTTGGGATTCTAATGACCAAACCGGGAAAGCCTATTCAAATTGTGAAGAATGTCCGTTTGTGTGGAGATTGCCATAACTTCTTGAAATATGTTTCTATTGTCACCAGAAGGAAAATACTTCTTAGGGACACTTCGGGATTTCATTGCTTTATAGATGGCCAATGCTCATGTACAGATTACTGGTAA 2637 40.69 MPTNPSPSTPPSPHLSKTSLSLCNPNPCLRPFNSTSPTQFLTSPQHLVSLSEPLFASRSLNTSLSTIASPFHLLRLSTRYGDPDLARAVHAQFLKLEEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAIELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLRVDHFSLSTLLTACVGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGIEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSIISLCGSIGFHEMGKQMHCHALKSGLITDTGVGNATVSMYSKCWNMDHAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLGATFGILMTKPGKPIQIVKNVRLCGDCHNFLKYVSIVTRRKILLRDTSGFHCFIDGQCSCTDYW* 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16396921 16399557 + Chy8G155030.1 Chy08g00898 232684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00898 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Chy08g00898 878 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 400 462 - -
Chy08g00898 878 Pfam PPR repeat 104 124 IPR002885 -
Chy08g00898 878 Pfam PPR repeat 439 459 IPR002885 -
Chy08g00898 878 Pfam PPR repeat 646 669 IPR002885 -
Chy08g00898 878 Pfam PPR repeat 335 365 IPR002885 -
Chy08g00898 878 Pfam PPR repeat 471 494 IPR002885 -
Chy08g00898 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Chy08g00898 878 Pfam E motif 693 749 IPR046848 -
Chy08g00898 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Chy08g00898 878 Gene3D Tetratricopeptide repeat domain 466 620 IPR011990 GO:0005515
Chy08g00898 878 Gene3D Tetratricopeptide repeat domain 621 799 IPR011990 GO:0005515
Chy08g00898 878 Gene3D Tetratricopeptide repeat domain 291 428 IPR011990 GO:0005515
Chy08g00898 878 Gene3D Tetratricopeptide repeat domain 55 187 IPR011990 GO:0005515
Chy08g00898 878 Gene3D Tetratricopeptide repeat domain 188 290 IPR011990 GO:0005515
Chy08g00898 878 PANTHER OS07G0172600 PROTEIN 473 864 - -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 203 232 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 335 365 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 132 166 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 471 493 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Chy08g00898 878 TIGRFAM PPR: pentatricopeptide repeat domain 234 266 IPR002885 -
Chy08g00898 878 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 473 864 - -
Chy08g00898 878 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 399 - -
Chy08g00898 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Chy08g00898 878 Pfam PPR repeat family 129 177 IPR002885 -
Chy08g00898 878 Pfam PPR repeat family 231 278 IPR002885 -
Chy08g00898 878 Pfam PPR repeat family 366 410 IPR002885 -
Chy08g00898 878 Pfam PPR repeat family 569 615 IPR002885 -
Chy08g00898 878 Pfam DYW family of nucleic acid deaminases 786 878 IPR032867 GO:0008270
Chy08g00898 878 PANTHER OS07G0172600 PROTEIN 37 399 - -
Chy08g00898 878 PANTHER OS07G0172600 PROTEIN 400 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00898 Chy-Chr8:16396921 Chy06g01233 Chy-Chr6:11205207 8.60E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00898 - - csv:101205681 1727.22