Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00903 ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGCAAAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCCTCTAAGCTCACCTGGACGGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGGTCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA 495 47.88 MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16424646 16426042 + Chy8G155080.1 Chy08g00903 232689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00903 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Chy08g00903 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Chy08g00903 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Chy08g00903 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Chy08g00903 164 SMART 4TRASH 8 46 IPR011017 -
Chy08g00903 164 MobiDBLite consensus disorder prediction 118 164 - -
Chy08g00903 164 Coils Coil 112 139 - -
Chy08g00903 164 MobiDBLite consensus disorder prediction 118 136 - -
Chy08g00903 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Chy08g00903 164 Gene3D - 69 140 - -
Chy08g00903 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Chy08g00903 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01983 Chy08g00903 CCT
Chy04g01983 Chy08g00903 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00512 Chy-Chr4:4999100 Chy08g00903 Chy-Chr8:16424646 2.22E-18 transposed
Chy03g00896 Chy-Chr3:12443880 Chy08g00903 Chy-Chr8:16424646 2.25E-18 transposed
Chy04g01983 Chy-Chr4:25684732 Chy08g00903 Chy-Chr8:16424646 3.74E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00903 K02896 - csv:101206866 256.529