Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00904 ATGGAATGGAATAATGGAAATATAAGTTTTAGTTCTAACTTTGTTTCTCCACCACCACAATCTTCTTCTTCCTCTGCATTGCTTTACAACTACAGCTTCAACTGCAACTACAATTTGGATCACTTTCCTGTAATAGAGACAACGACACGGGTAGCGACCGGGGAAGGCGATCAAAACATGGCTGGAGCTGGAGTGGATCATCAAAAGAAGAAGAGGTTGAGTCAAGATCAGTTGGAGGCATTGGAGAGAAGCTTTCAAGAAGAAGTAAAGCTTGATCCTGATAGGAAAATGAAGCTTTCAAAGGAACTTGGGCTTCAACCAAGGCAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGTTGGAAGACTAAGCAACTTGAGCATCTCTATGATGCTCTCAAGCAACAGTTTGATACTATCTCTAAGGAAAAACACAACCTTCAACAAGAGGTGATGAAATTAAGAAGCATGCTAAGAGAACAGACAACGAGGAACCAAGGGTCGATGGCTCACACGGACGTCTCTGGGGAAGAGACGACGGTGGAGTGCACGTCGGCGGAGATTCTGAGCTGTAACAATTACATGTACAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCACTTGCCTTCTTATCCTTAG 675 43.85 MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVIETTTRVATGEGDQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDALKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQGSMAHTDVSGEETTVECTSAEILSCNNYMYNVEDFNQISASAPPFWWGAEAAHLPSYP* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16431202 16433330 - Chy8G155090.1 Chy08g00904 232690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00904 224 Coils Coil 130 164 - -
Chy08g00904 224 Pfam Homeobox associated leucine zipper 124 158 IPR003106 GO:0006355|GO:0043565
Chy08g00904 224 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Chy08g00904 224 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 20 194 - -
Chy08g00904 224 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Chy08g00904 224 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Chy08g00904 224 CDD homeodomain 68 125 IPR001356 GO:0003677
Chy08g00904 224 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Chy08g00904 224 Gene3D - 65 129 - -
Chy08g00904 224 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Chy08g00904 224 SMART HOX_1 67 128 IPR001356 GO:0003677
Chy08g00904 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 20 194 IPR045224 GO:0003700
Chy08g00904 224 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01982 Chy08g00904 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00904 Chy-Chr8:16431202 Chy09g00265 Chy-Chr9:2206181 6.78E-32 dispersed
Chy04g01982 Chy-Chr4:25679320 Chy08g00904 Chy-Chr8:16431202 3.81E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18427 PF00046 Homeodomain 2.30E-17 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00904 - - csv:101206385 420.624