Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00920 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCCGTTCAAAGTAAGAGTGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCACAAGTAGATGTAAACACACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCTCGCTCGCCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCATCTGAAATGGCTGCTACGAAGAGATCATCAAAATTGTCTAGCTCTTCAAGAATTTCAGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTCATGGTTGAAGCCACCGAGTCAGGCTCTTCTTCAGATAATGGTAAAGGGGGACGTGTGGTTGAAATATCCCTGGTTCCAGAGGAAAAGAAATTGATCTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACCGGGTGCTAGTGCTCATTCTTCTCAGTTGCCCGTTGCGAAAACACAAAAACATATTGAGGTTGCTACTGTGGAATCAAACATCAAACCCACTTTGCCAAGGAAAGTTGGATCCCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACAATTGGCAAAGTTTTGGAGAAGGAGAAGAAAATTCTTGCAGGAAGTAGGGTAGCAAATAAAGTGACATCATCTAAGGCAGGACGCAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGAAATAAGGTAACCAAGTTATCTAGAAGTGCCTCTCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGGGATAATGATCCTAGTAAAAGGAAGTTAATATGTGAGAGGTGTCACTGTGCATTGAATAGTGCAGCTAAAGACTCCAAGAAGGGCTCTGCATCCCAGTTTCGTGCTTTTAGTAGTGATGTAAACATAACCAATCCAAAATCTGGTGTTAACAAAACAGGAATCAATGTAGATGGCAAGGCGTCTGATGTTAAAGTAAAAAGAAATACAAGGGTACGAGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAACGAGTATTATAAGTGATGATAGCAATGGGCATGGATCAAGTACTGGTAACAGACCTCATATGTCAAAAGATTTTAGGTGGGAAGCCATACGCAATGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTTAATCTTCTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCCGAGCTAACTGACACTCAGTGCCTATTTGCCATTAAGGTCATGGACAATGAGTTTCTAGCGAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAGTTTACTACAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCTGCAGCAAGATTTTATGTTGCTGAGGTTCTGCTTGCTTTGGAGTACTTACACATGCTTGGAGTTATTTATCGAGACTTGAAACCGGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTTTCACTTAGGTGCACGGTCAATCCAACACTCCTGAAGTCGTCTTCCTTCAATGCAGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAACCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACCTGACCTCACAACGCAGATCAGGTCGTTACCCCAACTCGTTGCCGAACCCACTGATGCACGTTCGAATTCCTTTGTTGGCACTCACGAATATTTGGCTCCTGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTACGAGCTTCTGTATGGCAGAACCCCTTTCAAGGGTTCCAACAATGATGAAACATTGTCCAATGTAATAATGCAAGGCCTCAGTTTTCCCGACACCCCAATCGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAAAATCGTTTCGGGACAGAGAAAGGAGCTGCGGAAATCAAACAGCACCCCTTCTTCGAGGGGCTTAACTGGGCATTAATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATGTGGACGTTACAAGTATGATTGCTCAACAAAACAAATTCAGGTATTTGGAAAGTAAGTCCACTGGAGAACACCTTGAGTTTGAATTGTTTTAG 2604 42.63 MGSGTCEIVEAREEIKPVQSKSGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVDVNTLRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAATKRSSKLSSSSRISEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEEKKLIFEKRLEHVQASAVKSPGASAHSSQLPVAKTQKHIEVATVESNIKPTLPRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVTSSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDNDPSKRKLICERCHCALNSAAKDSKKGSASQFRAFSSDVNITNPKSGVNKTGINVDGKASDVKVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSTGNRPHMSKDFRWEAIRNAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTDTQCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTTDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKPDLTTQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNDETLSNVIMQGLSFPDTPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDVDVTSMIAQQNKFRYLESKSTGEHLEFELF* 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16632692 16636167 - Chy8G155250.1 Chy08g00920 232706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00920 867 Gene3D Transferase(Phosphotransferase) domain 1 709 834 - -
Chy08g00920 867 MobiDBLite consensus disorder prediction 406 423 - -
Chy08g00920 867 Gene3D Phosphorylase Kinase; domain 1 481 562 - -
Chy08g00920 867 MobiDBLite consensus disorder prediction 12 32 - -
Chy08g00920 867 Pfam Protein kinase domain 713 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00920 867 Pfam Protein kinase domain 484 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00920 867 SMART serkin_6 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00920 867 MobiDBLite consensus disorder prediction 330 347 - -
Chy08g00920 867 CDD STKc_phototropin_like 481 837 - -
Chy08g00920 867 PANTHER FLIPPASE KINASE 1-RELATED 3 867 - -
Chy08g00920 867 MobiDBLite consensus disorder prediction 273 348 - -
Chy08g00920 867 SUPERFAMILY Protein kinase-like (PK-like) 460 834 IPR011009 -
Chy08g00920 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Chy08g00920 867 MobiDBLite consensus disorder prediction 273 313 - -
Chy08g00920 867 MobiDBLite consensus disorder prediction 424 458 - -
Chy08g00920 867 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 867 - -
Chy08g00920 867 ProSiteProfiles Protein kinase domain profile. 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00920 867 Gene3D Transferase(Phosphotransferase) domain 1 563 632 - -
Chy08g00920 867 MobiDBLite consensus disorder prediction 386 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00920 Chy-Chr8:16632692 Chy11g00892 Chy-Chr11:12325614 2.82E-129 dispersed
Chy01g01413 Chy-Chr1:19406602 Chy08g00920 Chy-Chr8:16632692 1.73E-71 transposed
Chy02g00475 Chy-Chr2:2924268 Chy08g00920 Chy-Chr8:16632692 0 transposed
Chy04g01423 Chy-Chr4:20858972 Chy08g00920 Chy-Chr8:16632692 0 transposed
Chy05g00118 Chy-Chr5:899509 Chy08g00920 Chy-Chr8:16632692 8.53E-72 transposed
Chy05g01330 Chy-Chr5:17433069 Chy08g00920 Chy-Chr8:16632692 2.21E-130 transposed
Chy06g00017 Chy-Chr6:112249 Chy08g00920 Chy-Chr8:16632692 4.69E-112 transposed
Chy07g01044 Chy-Chr7:15376101 Chy08g00920 Chy-Chr8:16632692 1.85E-107 transposed
Chy08g00017 Chy-Chr8:560827 Chy08g00920 Chy-Chr8:16632692 2.25E-168 transposed
Chy12g00620 Chy-Chr12:8912134 Chy08g00920 Chy-Chr8:16632692 0 transposed
Chy11g00891 Chy-Chr11:12313870 Chy08g00920 Chy-Chr8:16632692 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71445 PF00069 Pkinase 2.00E-36 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00920 - K08286 csv:101210027 1649.03