Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00932 ATGAAACGCGAGGTTGTGAAGAAGAAAGACATGGCGGAAGAGCATAGATGCCAAGCACCTGAAGGTCACCGTCTATGCGCCAATAACTGCGGATTCTTCGGTAGCCCAGCTACTATGGATCTCTGCTCCAAATGTTATAGAGATTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCAACCATCGAAGCCGCTCTCTCAGCTTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCTGTGCCTCCTGTTGTCGCCTTGTCCCTGCCGGACACCACCACAGATCTGACCATCCCTCCCCTTGCGGTGGTTGGATCTGATGTCACAAACCCGAACCCGAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGTGGAACCACCTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACTTTCGACTTCAAGTCAATCGGAAGAGAGGAGATTGCTCGAGCTAACCCCGTCGTCAAAGCCGACAAACTAGAGAGGATTTGA 540 52.04 MKREVVKKKDMAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVALSLPDTTTDLTIPPLAVVGSDVTNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16718825 16720345 + Chy8G155370.1 Chy08g00932 232718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00932 179 Pfam A20-like zinc finger 24 47 IPR002653 GO:0003677|GO:0008270
Chy08g00932 179 Pfam AN1-like Zinc finger 120 156 IPR000058 GO:0008270
Chy08g00932 179 SMART A20_3 23 47 IPR002653 GO:0003677|GO:0008270
Chy08g00932 179 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 11 179 - -
Chy08g00932 179 Gene3D - 9 79 - -
Chy08g00932 179 ProSiteProfiles Zinc finger A20-type profile. 20 54 IPR002653 GO:0003677|GO:0008270
Chy08g00932 179 SUPERFAMILY AN1-like Zinc finger 112 174 IPR035896 -
Chy08g00932 179 MobiDBLite consensus disorder prediction 60 75 - -
Chy08g00932 179 SMART AN1_Zf_4 120 157 IPR000058 GO:0008270
Chy08g00932 179 Gene3D - 106 175 IPR035896 -
Chy08g00932 179 MobiDBLite consensus disorder prediction 60 87 - -
Chy08g00932 179 ProSiteProfiles Zinc finger AN1-type profile. 114 160 IPR000058 GO:0008270
Chy08g00932 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 68 - -
Chy08g00932 179 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00120 Chy-Chr5:925140 Chy08g00932 Chy-Chr8:16718825 2.21E-44 dispersed
Chy08g00932 Chy-Chr8:16718825 Chy11g00908 Chy-Chr11:12490506 1.01E-58 dispersed
Chy08g00932 Chy-Chr8:16718825 Chy01g01877 Chy-Chr1:24151199 7.50E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00932 - - csv:101211758 300.056