Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00971 ATGCGCGGTGCTTCTCGAGCTCCGAAGCCATCGGAGCCACTGCCTCTGCCTCACTCCCATACGGCCCAGATCCTACCACCTCTCAACCGTCACCTCGCTTTTGACTCTCATAACCCGCCCTTTGTTCCACCCGGTCATTATTACCATTTCGCCGGCGACGGTTCTTCCAATGCTATTGATAAACCCGATACCATTGTTGTTAAACCTCTCCTTAGTAGTGCTAAATCAAAGCAGAAGGGTGTCATGTATAACAATTTGGTTAAATCGAATGATTACATTCATGATGAGGGATCTTCAAAAGATGCTCTTAGTTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGGGTAAACAATAGGTCAAAGACTTCAAGGAAAACTTCATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCCGGAAATTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCGTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGATAATATCCAGAAGTGGCTCTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAATTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGCCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGAAATGGGAAACAAACTTTTGTAAGGTTGCAGATAGGCAGAAAGAAGCACGTAAGATAGGTTTCCAGACATTATCAGAGCGGCAAAAGCTTCAAATGCATTGGTAA 1539 41.2 MRGASRAPKPSEPLPLPHSHTAQILPPLNRHLAFDSHNPPFVPPGHYYHFAGDGSSNAIDKPDTIVVKPLLSSAKSKQKGVMYNNLVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVNNRSKTSRKTSSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDDNIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVNTQRPRLGSPHSETAEAPSDVNLRQRKWETNFCKVADRQKEARKIGFQTLSERQKLQMHW* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16991819 16998135 - Chy8G155760.1 Chy08g00971 232757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00971 512 Gene3D - 145 218 IPR036388 -
Chy08g00971 512 PANTHER TRANSCRIPTION FACTOR E2F 14 462 IPR015633 GO:0000978|GO:0006357
Chy08g00971 512 SMART E2F_TDP_2 151 216 IPR003316 GO:0005667|GO:0006355
Chy08g00971 512 Pfam E2F/DP family winged-helix DNA-binding domain 153 216 IPR003316 GO:0005667|GO:0006355
Chy08g00971 512 MobiDBLite consensus disorder prediction 108 144 - -
Chy08g00971 512 SUPERFAMILY Winged helix DNA-binding domain 151 214 IPR036390 -
Chy08g00971 512 MobiDBLite consensus disorder prediction 454 473 - -
Chy08g00971 512 CDD E2F_DD 232 333 IPR032198 GO:0046983
Chy08g00971 512 Gene3D - 223 333 - -
Chy08g00971 512 MobiDBLite consensus disorder prediction 454 471 - -
Chy08g00971 512 Pfam E2F transcription factor CC-MB domain 232 332 IPR032198 GO:0046983
Chy08g00971 512 MobiDBLite consensus disorder prediction 1 22 - -
Chy08g00971 512 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 14 462 - -
Chy08g00971 512 Coils Coil 236 263 - -
Chy08g00971 512 SUPERFAMILY E2F-DP heterodimerization region 230 333 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00971 K06620 E2F3; transcription factor E2F3 - csv:101212480 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00206 Chy-Chr5:1743675 Chy08g00971 Chy-Chr8:16991819 3.82E-163 dispersed
Chy12g01298 Chy-Chr12:17432697 Chy08g00971 Chy-Chr8:16991819 8.89E-06 dispersed
Chy08g00971 Chy-Chr8:16991819 Chy02g02548 Chy-Chr2:28752355 6.46E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18433 PF16421 E2F_CC-MB 6.10E-33 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00971 Chy_Chr08 FPKM 0.0 0.0 1.281899 1.125462 8.18638 10.002382 13.889455 0.0 0.0 0.0