Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00971 ATGCGCGGTGCTTCTCGAGCTCCGAAGCCATCGGAGCCACTGCCTCTGCCTCACTCCCATACGGCCCAGATCCTACCACCTCTCAACCGTCACCTCGCTTTTGACTCTCATAACCCGCCCTTTGTTCCACCCGGTCATTATTACCATTTCGCCGGCGACGGTTCTTCCAATGCTATTGATAAACCCGATACCATTGTTGTTAAACCTCTCCTTAGTAGTGCTAAATCAAAGCAGAAGGGTGTCATGTATAACAATTTGGTTAAATCGAATGATTACATTCATGATGAGGGATCTTCAAAAGATGCTCTTAGTTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGGGTAAACAATAGGTCAAAGACTTCAAGGAAAACTTCATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCCGGAAATTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCGTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGATAATATCCAGAAGTGGCTCTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAATTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGCCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGAAATGGGAAACAAACTTTTGTAAGGTTGCAGATAGGCAGAAAGAAGCACGTAAGATAGGTTTCCAGACATTATCAGAGCGGCAAAAGCTTCAAATGCATTGGTAA 1539 41.2 MRGASRAPKPSEPLPLPHSHTAQILPPLNRHLAFDSHNPPFVPPGHYYHFAGDGSSNAIDKPDTIVVKPLLSSAKSKQKGVMYNNLVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVNNRSKTSRKTSSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDDNIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVNTQRPRLGSPHSETAEAPSDVNLRQRKWETNFCKVADRQKEARKIGFQTLSERQKLQMHW* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16991819 16998135 - Chy8G155760.1 Chy08g00971 232757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00971 512 Gene3D - 145 218 IPR036388 -
Chy08g00971 512 PANTHER TRANSCRIPTION FACTOR E2F 14 462 IPR015633 GO:0000978|GO:0006357
Chy08g00971 512 SMART E2F_TDP_2 151 216 IPR003316 GO:0005667|GO:0006355
Chy08g00971 512 Pfam E2F/DP family winged-helix DNA-binding domain 153 216 IPR003316 GO:0005667|GO:0006355
Chy08g00971 512 MobiDBLite consensus disorder prediction 108 144 - -
Chy08g00971 512 SUPERFAMILY Winged helix DNA-binding domain 151 214 IPR036390 -
Chy08g00971 512 MobiDBLite consensus disorder prediction 454 473 - -
Chy08g00971 512 CDD E2F_DD 232 333 IPR032198 GO:0046983
Chy08g00971 512 Gene3D - 223 333 - -
Chy08g00971 512 MobiDBLite consensus disorder prediction 454 471 - -
Chy08g00971 512 Pfam E2F transcription factor CC-MB domain 232 332 IPR032198 GO:0046983
Chy08g00971 512 MobiDBLite consensus disorder prediction 1 22 - -
Chy08g00971 512 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 14 462 - -
Chy08g00971 512 Coils Coil 236 263 - -
Chy08g00971 512 SUPERFAMILY E2F-DP heterodimerization region 230 333 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00206 Chy-Chr5:1743675 Chy08g00971 Chy-Chr8:16991819 3.82E-163 dispersed
Chy12g01298 Chy-Chr12:17432697 Chy08g00971 Chy-Chr8:16991819 8.89E-06 dispersed
Chy08g00971 Chy-Chr8:16991819 Chy02g02548 Chy-Chr2:28752355 6.46E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18433 PF16421 E2F_CC-MB 6.10E-33 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00971 K06620 - csv:101212480 807.749