Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00976 ATGGGAGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTTCGAGAGTCGCTTCAGAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTCGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTGGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGACCACATGAGGACTTAGAGATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAAATTTCAAAAGTAACGAAGCTATTCTTATCCACACAAGCAACTTGCTTGTTAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTTGATTGCCTCCCCAACAATTTGCGTCCATCGTCAGCATCTGCACACCATGGTGATAGTGGTAGCAAAATTAACTCTGACCAACACAACAAAAGCTTAGAAGCTGCCGTCTTCATTCCACCAACTCTAATCCCACCCAGGGTTCTTCCATTGTTGCATGACTTGGCTCAACAAATGATTCAGGCTGGTCATCAGCAGCAGCTGTTTAGAATATATAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTTACCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATTTTTGACGGTGCAGACTCTCTCCAAGATCAATGCTTCGCTGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCCATTGCCAGAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGTATTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACGGCAGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTCTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCTAGTGATCCAGATGCTCAGATAGCAGTGGTAACTACAAGAATCATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAACAATATAGGGATCCTGCACTAACTCAATTATTTCTTATGAACAATATTCACTATATAGTGAGATCCGTTCGAAGATCGGAGGCAAAGGATTTGCTGGGTGATGACTGGGTGCAGATACATCGACGGGTTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAGGCCTCAGGTAGTGGTGGTGGTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTCAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTAAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGCAGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAGCGTTAG 1920 43.75 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKNFKSNEAILIHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNNLRPSSASAHHGDSGSKINSDQHNKSLEAAVFIPPTLIPPRVLPLLHDLAQQMIQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLTKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACIEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQIAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRVVQQHANQYKRISWAKILQCLTVQASGSGGGSGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGRPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17024699 17031962 - Chy8G155810.1 Chy08g00976 232762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00976 639 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 36 636 - -
Chy08g00976 639 Pfam Exo70 exocyst complex subunit 273 627 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy08g00976 639 SUPERFAMILY Cullin repeat-like 76 630 IPR016159 -
Chy08g00976 639 Gene3D Exocyst complex component Exo70 75 639 - -
Chy08g00976 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 636 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00976 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:105436019 1217.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01600 Chy-Chr3:17959302 Chy08g00976 Chy-Chr8:17024699 2.23E-44 dispersed
Chy08g00976 Chy-Chr8:17024699 Chy10g01231 Chy-Chr10:16950412 0 dispersed
Chy10g01232 Chy-Chr10:16959372 Chy08g00976 Chy-Chr8:17024699 5.73E-40 dispersed
Chy08g00976 Chy-Chr8:17024699 Chy12g00132 Chy-Chr12:1479268 2.64E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01231 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G03540 70.9 2.3e-264 908.3
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G52340 80.0 1.9e-297 1018.1
Chy10g01231 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Chy08g00976 . 145 632 EXO70 exocyst subunit family AT5G52350 63.2 1.2e-173 606.7
Chy10g01231 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Chy12g00323 . 1 630 EXO70 exocyst subunit family AT5G58430 66.3 4.9e-245 844.0
Chy12g00323 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 8.8e-175 610.5
Chy07g01488 . 60 673 EXO70 exocyst subunit family AT5G13150 53.0 1.1e-173 607.1
Chy04g00756 . 12 611 EXO70 exocyst subunit family AT1G72470 64.5 2.7e-214 741.9
Chy04g00756 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 3.7e-208 721.5
Chy04g00756 . 9 608 EXO70 exocyst subunit family AT3G14090 64.1 1.0e-218 756.5
Chy12g01170 . 18 656 EXO70 exocyst subunit family AT5G50380 62.0 1.7e-227 785.8
Chy02g01759 . 13 651 EXO70 exocyst subunit family AT5G50380 61.8 8.1e-225 776.9
Chy03g01199 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 5.9e-292 1000.0
Chy10g00590 . 58 601 EXO70 exocyst subunit family AT3G55150 51.1 9.4e-151 530.8
Chy11g01268 . 30 595 EXO70 exocyst subunit family AT3G55150 50.3 3.4e-148 522.3
Chy10g00590 . 27 601 EXO70 exocyst subunit family AT2G39380 51.5 2.2e-155 546.2
Chy04g02117 . 27 633 EXO70 exocyst subunit family AT3G09520 54.6 4.4e-177 618.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00976 Chy_Chr08 FPKM 12.000625 10.840261 14.588323 17.167 18.193304 16.788496 18.873018 20.89006 20.849131 22.573214