Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00980 ATGAACGATTTGTTTTCCACTGATTCCTTCCGCCAAGAGCATCACCAATATCGCCGACATGGCACCGTCGAGATGTCCGACGACTCGCCCTCCTCAACCACGATCAATCTCAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAATTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCGAAGGCGATTAAGGATGTTCGATCGCGAATGGAAGCGGCTGTGACATCGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGCTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCGGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAGACGTATAAGGAGACGGTTGAGCGGAGGTATTTTACAATTACAGGGGAAATTCCGGATGAGAAGACTGTTGAATTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTCTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTCTTGTTCAAGCACAGGGGCAGCACTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCTGTCAAGCGGGGCACGTCTCAGCTACAAACTGCAAGATACTATCAAAAGAACACTCGCAAATGGATCTGCATAGGCATTAGTATTTTTGCAGCCATTGTCATCATCATTATCGTTGCTGTCGTCCTCTCAAATAAGTAA 912 47.48 MNDLFSTDSFRQEHHQYRRHGTVEMSDDSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMEAAVTSALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKETVERRYFTITGEIPDEKTVELLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVLVQAQGQHLDDIESQVTRANSAVKRGTSQLQTARYYQKNTRKWICIGISIFAAIVIIIIVAVVLSNK* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17055773 17056809 + Chy8G155850.1 Chy08g00980 232766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00980 303 CDD SNARE_syntaxin1-like 206 268 - -
Chy08g00980 303 Gene3D - 202 301 - -
Chy08g00980 303 PANTHER SYNTAXIN 15 297 IPR045242 -
Chy08g00980 303 SMART SynN_4 32 158 IPR006011 GO:0016020
Chy08g00980 303 Coils Coil 44 64 - -
Chy08g00980 303 SMART tSNARE_6 202 269 IPR000727 -
Chy08g00980 303 CDD SynN 40 194 IPR006011 GO:0016020
Chy08g00980 303 Gene3D - 37 164 - -
Chy08g00980 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Chy08g00980 303 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Chy08g00980 303 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy08g00980 303 PANTHER SYNTAXIN-121 15 297 - -
Chy08g00980 303 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Chy08g00980 303 Pfam SNARE domain 245 295 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00980 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101213443 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00980 Chy-Chr8:17055773 Chy12g00974 Chy-Chr12:15035977 9.88E-113 dispersed
Chy04g01397 Chy-Chr4:20568837 Chy08g00980 Chy-Chr8:17055773 5.42E-86 transposed
Chy06g02160 Chy-Chr6:25892952 Chy08g00980 Chy-Chr8:17055773 2.91E-09 transposed
Chy04g01850 Chy-Chr4:24681494 Chy08g00980 Chy-Chr8:17055773 1.04E-139 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy08g00517 . 1 310 SNARE and Associated Proteins AT1G08560 66.4 1.4e-99 359.8
Chy02g00640 . 1 303 SNARE and Associated Proteins AT2G18260 53.8 3.7e-84 308.5
Chy04g01850 . 22 279 SNARE and Associated Proteins AT3G11820 80.6 3.0e-113 405.2
Chy08g00980 . 25 284 SNARE and Associated Proteins AT3G11820 70.0 3.5e-98 355.1
Chy12g00974 . 31 281 SNARE and Associated Proteins AT3G11820 65.3 2.4e-91 332.4
Chy04g01397 . 21 280 SNARE and Associated Proteins AT3G11820 51.5 7.2e-67 251.1
Chy04g01850 . 31 279 SNARE and Associated Proteins AT3G52400 69.5 3.8e-90 328.6
Chy08g00980 . 36 284 SNARE and Associated Proteins AT3G52400 66.7 1.7e-85 313.2
Chy12g00974 . 1 281 SNARE and Associated Proteins AT3G52400 56.0 2.1e-80 296.2
Chy12g00974 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 4.0e-107 384.8
Chy04g01850 . 1 278 SNARE and Associated Proteins AT4G03330 56.9 1.9e-80 296.2
Chy08g00980 . 1 302 SNARE and Associated Proteins AT4G03330 54.0 1.8e-78 289.7
Chy04g01397 . 34 280 SNARE and Associated Proteins AT4G03330 54.7 9.1e-67 250.8
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G61290 79.6 1.2e-127 453.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G61290 62.6 2.2e-89 325.9
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G61290 55.7 1.3e-81 300.1
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G61290 50.4 6.7e-62 234.6
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.2e-124 443.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G11250 62.4 2.3e-91 332.4
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G11250 55.4 3.0e-83 305.4
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G11250 51.6 5.4e-64 241.5
Chy04g01397 . 3 299 SNARE and Associated Proteins AT3G03800 73.1 3.0e-110 395.2
Chy11g00597 . 42 297 SNARE and Associated Proteins AT3G03800 58.2 3.3e-77 285.4
Chy04g01397 . 3 198 SNARE and Associated Proteins AT5G08080 76.5 6.6e-75 277.3
Chy11g00597 . 24 214 SNARE and Associated Proteins AT5G08080 59.2 3.9e-51 198.4
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 1.4e-74 276.6
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G46860 65.2 6.9e-79 290.8
Chy06g02160 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 3.3e-73 271.9
Chy06g02160 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 9.2e-52 201.1
Chy10g00436 . 1 336 SNARE and Associated Proteins AT5G05760 65.6 3.9e-111 398.3
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy05g01060 . 1 317 SNARE and Associated Proteins AT5G26980 75.7 1.5e-123 439.5
Chy01g01727 . 1 310 SNARE and Associated Proteins AT5G26980 66.6 1.6e-101 366.3
Chy01g01727 . 1 309 SNARE and Associated Proteins AT4G02195 67.4 9.8e-104 373.6
Chy05g01060 . 1 317 SNARE and Associated Proteins AT4G02195 62.4 1.5e-99 359.8
Chy05g01060 . 1 317 SNARE and Associated Proteins AT3G05710 74.5 1.2e-125 446.4
Chy01g01727 . 1 310 SNARE and Associated Proteins AT3G05710 63.7 4.1e-97 351.7
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G16240 73.1 1.5e-90 329.3
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G16240 65.8 5.6e-77 284.3
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G79590 72.6 1.1e-89 326.6
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G79590 65.4 3.8e-77 285.0
Chy11g01970 . 106 260 SNARE and Associated Proteins AT1G28490 69.7 2.9e-53 205.3
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G09740 77.9 7.5e-110 393.7
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G09740 76.8 2.1e-96 349.0
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G45280 65.5 4.0e-87 318.2
Chy04g02075 . 1 230 SNARE and Associated Proteins AT3G45280 64.4 5.1e-74 274.6
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G61450 68.9 7.9e-96 347.1
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G61450 66.4 3.8e-82 301.6
Chy03g00164 . 65 309 SNARE and Associated Proteins AT1G51740 73.3 1.7e-92 335.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002313 5 3 2 3 3 1 2 1 1 2 1 2 2 2 2 2 2 2 3 1 3 2 2 2 3 1 2 3 2 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00980 Chy_Chr08 FPKM 26.185972 30.76313 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0