Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00980 ATGAACGATTTGTTTTCCACTGATTCCTTCCGCCAAGAGCATCACCAATATCGCCGACATGGCACCGTCGAGATGTCCGACGACTCGCCCTCCTCAACCACGATCAATCTCAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAATTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCGAAGGCGATTAAGGATGTTCGATCGCGAATGGAAGCGGCTGTGACATCGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGCTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCGGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAGACGTATAAGGAGACGGTTGAGCGGAGGTATTTTACAATTACAGGGGAAATTCCGGATGAGAAGACTGTTGAATTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTCTGGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTCTTGTTCAAGCACAGGGGCAGCACTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCTGTCAAGCGGGGCACGTCTCAGCTACAAACTGCAAGATACTATCAAAAGAACACTCGCAAATGGATCTGCATAGGCATTAGTATTTTTGCAGCCATTGTCATCATCATTATCGTTGCTGTCGTCCTCTCAAATAAGTAA 912 47.48 MNDLFSTDSFRQEHHQYRRHGTVEMSDDSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMEAAVTSALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKETVERRYFTITGEIPDEKTVELLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVLVQAQGQHLDDIESQVTRANSAVKRGTSQLQTARYYQKNTRKWICIGISIFAAIVIIIIVAVVLSNK* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17055773 17056809 + Chy8G155850.1 Chy08g00980 232766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00980 303 CDD SNARE_syntaxin1-like 206 268 - -
Chy08g00980 303 Gene3D - 202 301 - -
Chy08g00980 303 PANTHER SYNTAXIN 15 297 IPR045242 -
Chy08g00980 303 SMART SynN_4 32 158 IPR006011 GO:0016020
Chy08g00980 303 Coils Coil 44 64 - -
Chy08g00980 303 SMART tSNARE_6 202 269 IPR000727 -
Chy08g00980 303 CDD SynN 40 194 IPR006011 GO:0016020
Chy08g00980 303 Gene3D - 37 164 - -
Chy08g00980 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Chy08g00980 303 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Chy08g00980 303 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy08g00980 303 PANTHER SYNTAXIN-121 15 297 - -
Chy08g00980 303 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Chy08g00980 303 Pfam SNARE domain 245 295 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00980 Chy-Chr8:17055773 Chy12g00974 Chy-Chr12:15035977 9.88E-113 dispersed
Chy04g01397 Chy-Chr4:20568837 Chy08g00980 Chy-Chr8:17055773 5.42E-86 transposed
Chy06g02160 Chy-Chr6:25892952 Chy08g00980 Chy-Chr8:17055773 2.91E-09 transposed
Chy04g01850 Chy-Chr4:24681494 Chy08g00980 Chy-Chr8:17055773 1.04E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00980 K08486 - csv:101213443 545.043