Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00981 ATGAACAACGGCACGGCCGAAACCGGCGGATTTCTCTCCTCCTCCAACATCGGCGGTTTCGGCTACGGAATTGGCGTCTCCTTAGGCCTTTTGATTCTCATCACTACCATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCACCTCCGTCATTCAGAGGACTCCTCCCAATCGCTCCCCGCCCCAAGCGGTGGAGGAATTGGATTCCGTCGTCGTTGAAATCGGACTCGATCAGGAAACCATTACGAGTTATCCCAAATTACTGTATTCTGAAGCGAAACTTCAGAAGAACGATTCGACTGCTTCTTGTTGTTCAATCTGTTTGGCTGATTATAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTTAGACTTCATCCCACTTGTCCGGTTTGCCGGACGTCACCGATTCCTACGCCGTTGTCGACTCCTCTAGCGGAGCAAGTTCCATTAGCGAGCCGGCGCGATTGA 522 51.34 MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQRTPPNRSPPQAVEELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17059048 17059569 + Chy8G155860.1 Chy08g00981 232767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00981 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Chy08g00981 173 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Chy08g00981 173 SUPERFAMILY RING/U-box 84 155 - -
Chy08g00981 173 Pfam Ring finger domain 108 150 IPR001841 -
Chy08g00981 173 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 171 - -
Chy08g00981 173 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 171 IPR045899 -
Chy08g00981 173 SMART ring_2 108 149 IPR001841 -
Chy08g00981 173 CDD RING-H2_PA-TM-RING 107 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01153 Chy-Chr7:16428613 Chy08g00981 Chy-Chr8:17059048 1.20E-20 dispersed
Chy08g00981 Chy-Chr8:17059048 Chy03g01341 Chy-Chr3:16373185 2.29E-21 dispersed
Chy06g00141 Chy-Chr6:912301 Chy08g00981 Chy-Chr8:17059048 6.60E-32 transposed
Chy04g01844 Chy-Chr4:24637858 Chy08g00981 Chy-Chr8:17059048 1.22E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00981 - - csv:101218618 313.153