Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00986 ATGAACAACGGCACCGCTCGGAAAAGTCGACCGCCGCCGCAGCACCCATCCCCCGCCCCACCGCCAAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTTGCTTCCCGGATTTCGAAATGGGCTCGTCCACCTCTTTCCCAGGATTATCTGTCACAGTCGAAGAGCATCGTGTTCCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAAGGAACTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTTCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGGAACAATAAAGCACCTAACTTTGTGCGTCGCATTGAGTTGGTGCAAAGGAGAAGTATTATGTACTACCAGCAGCAGACTTTTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTTGGAAAATATAAGAAAACTGTTAGAAGTTTATCATATTGCCAATTGGAGTTCGATTGCTTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGATCAACCTTTTGTTCGGAATGTCATGACCCTTAACACTTGCTCTCCTATCGCGGGTGTTGACGTCTTATCATTTGATACAGAGCGTGATGTATTACTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATACAACATCTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTAAAAATACCAGAATTTCCATTATTGGGTCGCATCAGGAACAACAAAGTCCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGGAGAGTTCAATTTGATTTACTTCAGGTTATGCAACGAGATTATAAATTAAGTTCATATTCATTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACTAGGAGACGTCTTGCTGTGTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCCTCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGCTTGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACGGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGACCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCGCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCCACCGTTGGTCAGTTGCCTTGTTTAGAAATATCATCAAGTGTGACAAGCTATGGTCGGCAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGGTCTTGGGAAGGGAAGCAGCCGACTATATCAGTGGTACTTTCATAAGACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATATGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTTCCTGGGGCAGTCCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTAGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTATGTGATCGTTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCGATAGACCCTCAGTATTATCTTGAGAATCAGATCAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACACGATCAATTTTTATTTCTACTCCGTCAAACAGTGGTATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTACTAGGCCTTACCAGAAGACTTCATGAGAATGTCCGAGCTGACTTATACCTCCTATTAGTGATGGTAGAGGGTTACGCTGTTTATCTATCAAAGCTTCTACATCTGATATGGGAAAATAAGAAACTTTCTCAGGCCTGGCAATGCTTTTTCAATAAATTCCGTACTATTGTTGACTGTACTCCAGCAAGTCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCGGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAGTGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTTGATGACTTTGATGTTGACTAG 3375 42.67 MNNGTARKSRPPPQHPSPAPPPKHQALSQEEDFVDEDVFLDENLLDEDALILRDIEERQALASRISKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHKELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPSGMGPDDISLFHRTLEARMKEVNRNNKAPNFVRRIELVQRRSIMYYQQQTFQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRSLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGEDQPFVRNVMTLNTCSPIAGVDVLSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIPEFPLLGRIRNNKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDACKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAADYISGTFIRPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLGLTRRLHENVRADLYLLLVMVEGYAVYLSKLLHLIWENKKLSQAWQCFFNKFRTIVDCTPASQTKLSAHTAKEEKRNFTAKRLQMCLIWRWFLGGFGHSAKSAKGLFTKMSSVRVDDFDVD* 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17088084 17104769 - Chy8G155910.1 Chy08g00986 232772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00986 1124 Gene3D - 294 512 IPR036397 GO:0003676
Chy08g00986 1124 Gene3D Helix hairpin bin 641 693 - -
Chy08g00986 1124 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Chy08g00986 1124 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1048 - -
Chy08g00986 1124 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Chy08g00986 1124 CDD POLBc_delta 567 960 - -
Chy08g00986 1124 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Chy08g00986 1124 CDD DNA_polB_delta_exo 290 518 - -
Chy08g00986 1124 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Chy08g00986 1124 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Chy08g00986 1124 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Chy08g00986 1124 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Chy08g00986 1124 Gene3D - 814 969 IPR042087 -
Chy08g00986 1124 TIGRFAM pol2: DNA polymerase (pol2) 353 957 - -
Chy08g00986 1124 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1048 - -
Chy08g00986 1124 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Chy08g00986 1124 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Chy08g00986 1124 MobiDBLite consensus disorder prediction 1 32 - -
Chy08g00986 1124 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Chy08g00986 1124 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01092 Chy-Chr5:15396044 Chy08g00986 Chy-Chr8:17088084 1.03E-10 dispersed
Chy08g00986 Chy-Chr8:17088084 Chy11g00218 Chy-Chr11:2035459 6.95E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00986 K02327 - csv:101219332 1962.19