Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01002 ATGCATTCTTTTGGTTATCGAGCCAATGCTTTGGCTACTTTCGCCATCACTATTCTCGTAATTATGTGCGCCATGGCTTCCTTCTCCGATACCTTCAACACTCCCTCTCCCACCGCCAGTGTTAAGGTATTGAACATCAACTGGTTTCAGAAACAGCTTCATGGAAATGACGAGGTTAGCATGACATTAAATATCTCGGCGGACTTGCAGTCACTATTTACATGGAACACAAAGCAGGTTTTTGTTTTTGTAGCTGCTGAGTATGAGACTCCTAAGAATTCCTTGAACCAGGTAAGCTCCATCTATACGTCTTCTAGATTTCTAATCCTACTGCTTATCTTATTCAGTTGTTGTGACATTGTCATTCAGATCTCACTGTGGGATGGTATAATACCTTCCAAAGAAAACGCCAAGTTTTCAATTCACACTTCAAACAAATACCGTTTCATCGATCAGATTCAGTTGCGGGAAAATGGATGCTTTGATTTGATTTCTCTTGGGAATGGCATGGCATTCGCTATCTCCTTCCTCAAATCCTCCGCTCTCTTTCTCACCATTCTCTCTGTTTTTATCTTCTTCATCCTCTTCACTCCCAATCCCTCGCCGCATTCCCCCTCCAGAAGGTTCCTCATCGCCACCGGCGATTCCAATTCCAGTTTCTCTCCGACTCCATCTTGTTCCTCTGTTGAATCTCACTCTGATGGCCTTGTTAACTACTTATATTTCCATTTTTGCTTCTTCAATGAAAACCCATCTCTCTCTGTCCCTTTTCTCACTCTCTTTCTTCTCCTCCATTTCTACATCCTCATCAAAACCGCTCAAGATCACTTCTCCATTGTCACTTCCAAGCTCGCCTTTCACCTTAACTTGTCTCCCAGTATGGCTGCTGTGACGCTCTTGGCTTTGGGTAATGGCGCACCTGATGTGTTTGCATCTGTTGCTGCGGTTCGTGGTGGCCAGTATCGAACTGGGTTTGGTGCAATTCTCTCTGCCGGCACGTTTGTTTCGGCTTTTGTTGTTGGGTTTGTGGCTATTTATGCTGCTCCGTTTTCGGTGAATCCTGCTCAGTTTGTGAGGGATGTGTTGTTCTATTTGACTGCAGCATTGTTTTTGTTCTATGTGTATCTTAGTGCAGAGATTTTCTTGTGGCAAGCTGTTGGGTTTGTTGGGTTTTATTTGTTCTTTGTTGGATTGGTGTTTTGGATGGATTTGAGAATGGGAAGTGGGAAAGCTAAGAGTGGGGGTGATTTGGGAGTGACTAGAGAAGCTGATGTCTACCATGGTGACTTGCCTAAAGACTGTGAGATTGGAGAAGGCTACAGAAATGTAGATGAAGGAAAAACCAATTCTGGATTTTGGAAAGCTCTTCGAATAATCCGAAAAGCATGGGAAGCTCCTGTTTCATTTCTTCTGAAGCTCACCATTCCCCAACCTGCACCTTCTGAATGGAACAGACTCTTTGCATCGGCGAACATTTCTCTCTGTCCTGTTGTGCTTCTATTTGCCTGTAACTCATTCATGTCATTTAATCATCCCATTGCTTTCCTCTTACCAAATACGCATTTACCACTTTGGTTCGTAGTACTCCTAGCAAGCTCCTCTCTTGCAATTCTACACTTTGTCATGGAAACTGAGCCCCCAAAAACTGAGCAAGTTCCTATTGTGCTTGCAGCATTTGTCATGAGTGTATTTTGGATTTCGACCATTGCTGGGGAGCTGCTGAACTGTCTTGCAGTTCTTGGAGTGCTTCTTAAACTCCCACCAGCTCTACTTGGTCTTACTGTGCTTGCTTGGGGAAACTCAGTTGGGGATCTTGTGGCTGATGTTGCTCTTGCAAAAGCAGGCCAACCTTTGCTTGCTATGGCTGGATGCTTTGCAGGGCCAATGTTTAACATGCTTGTGGGACTTGGAACAGCTTTAGTTATACAAACAGCTAACAGTTATCCGGACGCCTACCAGCTTCAATTTCATATCGGAATCGTCATTGCATTCGTGTTCCTACTTTTCAGCCTGATGGGTTCCCTACTTGTAATTATTTGGTGCAGATTTCGAGTGCCCCGGTTTTGGGGATTCTGCCTTGTACTGTTGTACATTGTCTTCATGGCTGCCAGTTTACTGATGGCCAAGTTTTCTCCATGA 2139 44.23 MHSFGYRANALATFAITILVIMCAMASFSDTFNTPSPTASVKVLNINWFQKQLHGNDEVSMTLNISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSSIYTSSRFLILLLILFSCCDIVIQISLWDGIIPSKENAKFSIHTSNKYRFIDQIQLRENGCFDLISLGNGMAFAISFLKSSALFLTILSVFIFFILFTPNPSPHSPSRRFLIATGDSNSSFSPTPSCSSVESHSDGLVNYLYFHFCFFNENPSLSVPFLTLFLLLHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAVGFVGFYLFFVGLVFWMDLRMGSGKAKSGGDLGVTREADVYHGDLPKDCEIGEGYRNVDEGKTNSGFWKALRIIRKAWEAPVSFLLKLTIPQPAPSEWNRLFASANISLCPVVLLFACNSFMSFNHPIAFLLPNTHLPLWFVVLLASSSLAILHFVMETEPPKTEQVPIVLAAFVMSVFWISTIAGELLNCLAVLGVLLKLPPALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANSYPDAYQLQFHIGIVIAFVFLLFSLMGSLLVIIWCRFRVPRFWGFCLVLLYIVFMAASLLMAKFSP* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17289168 17295397 + Chy8G156070.1 Chy08g01002 232788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01002 712 Pfam Sodium/calcium exchanger protein 556 705 IPR004837 GO:0016021|GO:0055085
Chy08g01002 712 Pfam Sodium/calcium exchanger protein 260 400 IPR004837 GO:0016021|GO:0055085
Chy08g01002 712 Pfam Signal peptidase subunit 1 152 IPR007653 GO:0005787|GO:0006465|GO:0016021
Chy08g01002 712 Gene3D - 487 705 IPR044880 -
Chy08g01002 712 Gene3D - 290 415 IPR044880 -
Chy08g01002 712 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 224 407 - -
Chy08g01002 712 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 224 407 - -
Chy08g01002 712 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 453 711 - -
Chy08g01002 712 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 453 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01624 Chy-Chr4:22671095 Chy08g01002 Chy-Chr8:17289168 1.99E-59 dispersed
Chy05g01129 Chy-Chr5:15772209 Chy08g01002 Chy-Chr8:17289168 8.31E-64 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01002 K13754 - csv:101209909 973.0