Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01003 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTATATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 780 46.54 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17300087 17300866 + Chy8G156080.1 Chy08g01003 232789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01003 259 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Chy08g01003 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 258 - -
Chy08g01003 259 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Chy08g01003 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Chy08g01003 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01003 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00305 Chy-Chr1:2168276 Chy08g01003 Chy-Chr8:17300087 1.11E-82 dispersed
Chy02g02666 Chy-Chr2:29657404 Chy08g01003 Chy-Chr8:17300087 1.30E-70 dispersed
Chy07g01210 Chy-Chr7:16922735 Chy08g01003 Chy-Chr8:17300087 3.38E-28 dispersed
Chy08g01003 Chy-Chr8:17300087 Chy10g00706 Chy-Chr10:13408346 1.08E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.9 4.6e-87 317.8
Chy08g01003 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Chy01g00305 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.5e-53 204.1
Chy08g01003 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Chy01g00305 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.5e-49 191.0
Chy02g02666 . 2 97 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.3 1.7e-41 166.4
Chy08g01003 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Chy01g00305 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Chy02g02666 . 2 157 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 4.2e-50 194.9
Chy02g02666 . 8 156 CCAAT-HAP5 Transcription Factor Family AT5G50480 56.3 1.7e-37 152.9
Chy02g02666 . 1 183 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.7 3.8e-79 291.6
Chy08g01003 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Chy01g00305 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Chy01g00305 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Chy08g01003 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Chy02g02666 . 1 122 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.4 4.3e-49 191.4
Chy03g00679 . 62 196 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 1.4e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18437 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g01003 Chy_Chr08 FPKM 28.759876 35.247143 21.960493 22.302635 32.62569 34.324505 36.120464 25.437677 21.785553 22.266329