Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01003 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTATATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 780 46.54 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17300087 17300866 + Chy8G156080.1 Chy08g01003 232789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01003 259 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Chy08g01003 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 258 - -
Chy08g01003 259 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Chy08g01003 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Chy08g01003 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00305 Chy-Chr1:2168276 Chy08g01003 Chy-Chr8:17300087 1.11E-82 dispersed
Chy02g02666 Chy-Chr2:29657404 Chy08g01003 Chy-Chr8:17300087 1.30E-70 dispersed
Chy07g01210 Chy-Chr7:16922735 Chy08g01003 Chy-Chr8:17300087 3.38E-28 dispersed
Chy08g01003 Chy-Chr8:17300087 Chy10g00706 Chy-Chr10:13408346 1.08E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18437 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01003 K08066 - csv:101209664 445.277