Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01016 ATGGAAAACCATCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAAAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGCAAAGAATGCAAGAATGTGCAACTGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATTTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCCGAGGCTTCTTCCAAGTTCTTGCTTAACTTTAGAGAAGTTGAAAGAATCAAGGTTGATGAAGTTAAATACAAAAGTACTCAACAACTGCTATTACGAGAAGATGATGATAAAAAACGTAAAGATAACCATGGAGAGATCGGGCTTATGTTTGAGAACTCATGTGACATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTGCCTTTGAAACTGAACTACGCGGTGTCATTCCGGTTGTTAAAGCATCTATTGGTGGCACTCGCATTATTGGTCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGATCAAGAACTTCAGCACTTGAGGAACAGTTTGCCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTGGGAAACACGATTGCTTGTAATGATCACGTTGCTCTCGCACATTCTGATCTTGATCGGGAAACTGAAGACCTCATCGCTGATGTTCTTGGAGTAGAGGTCTTTAGACAGACAGTAGCGGGCAACGTTCTCGTAGGAAGCTACTCTAGTTTTACGAATAGGGGAGGCTTGGTTCATCCACATACATCCGTTGAAGATTTAGAGGAGCTATCAACCCTTCTTCAGGTCCCATTAGTCGCTGGAACCGTGAATCGTGGTAGTGAAGTGATTGCGGCTGGATTAACAGCTAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCCACCGAGTTATCGGTCATCGAGAATGTTTTCAAATTGAGGGAGGCTCAACCAAGCTCCATTGTTGAAGAAATGAGGAAGTCGTTAATTGACAGTTATGTGTGA 1122 41.98 MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKQRMQECATEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEVKYKSTQQLLLREDDDKKRKDNHGEIGLMFENSCDIGVFSKLTNAYCLVAIGGSENFYSAFETELRGVIPVVKASIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHSDLDRETEDLIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSLIDSYV* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17369081 17372943 - Chy8G156210.1 Chy08g01016 232802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01016 373 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Chy08g01016 373 PRINTS CCAAT-binding transcription factor subunit A signature 40 58 - -
Chy08g01016 373 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Chy08g01016 373 CDD IF6 135 351 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 SUPERFAMILY Histone-fold 12 125 IPR009072 GO:0046982
Chy08g01016 373 Gene3D - 132 353 - -
Chy08g01016 373 Pfam eIF-6 family 134 331 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 TIGRFAM eIF-6: putative translation initiation factor eIF-6 134 352 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 SMART eIF6neu2 131 332 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 Hamap Translation initiation factor 6 [eif6]. 118 373 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 12 75 IPR003958 -
Chy08g01016 373 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 133 373 IPR002769 GO:0042256|GO:0043022
Chy08g01016 373 SUPERFAMILY Pentein 134 352 - -
Chy08g01016 373 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 133 373 - -
Chy08g01016 373 Gene3D Histone, subunit A 2 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01016 Chy-Chr8:17369081 Chy11g00024 Chy-Chr11:305141 1.60E-129 dispersed
Chy08g01015 Chy-Chr8:17367715 Chy08g01016 Chy-Chr8:17369081 1.53E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18439 PF01912 eIF-6 1.90E-77 CL0197 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01016 K03264 - csv:101207707 467.233