Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01019 ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTTGTGGCTGATGCTGAGAAATTAGAGAATCAGTTCTTTAATGGAACCTTTGAATCTCATCATCAACAACCTCAACCTCAGCTTGTAGTTCCCAAGAAGAAGAGGAACTTGCCAGGAACACCAGTTCCAGATGCAGAGGTGGTAGCATTATCTCCCGAAACCCTAATGGCGACGAATCGATTCTTGTGTGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAACTTGCAACTACACAGACGAGGGCATAACCTACCATGGAAGTTGAAGCAAAGGACGAGTGGGAGCGAGACGAAGAGGAAGGTGTACGTGTGCCCGGAACCGTCGTGCGTGCACCACGACCCAGGGAGGGCACTGGGAGACCTCACGGGGATCAAGAAACATTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCGAAGAAATATGCTGTTCAATCTGACTTGAAAGCTCATACCAAAGCATGTGGATCAAAGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGAAGAGATAGCTTTATCACCCATAGAGCATTTTGTGATGCCTTAGCAGAAGAACACAACAAATTAGTCAATGCTCATCAAGGAGCAACAACAATGGCTTCTTCCACAGCCATTAATGGACCTTCCTTTCAACCTCAACCACTTTCTCATCTTCTCTCTCGACCCGGCATCCTTTCGCTGCCATTAACAACGCTGCCCCGCGACCTTATGCCTATTCCTCCAAAGCCCTTAAACCTATCTGCTGGATCCATGTTTTCATCTTCCATTTCCAACAACTCCACCACCCCCACCACCTTTCAAAACGACAACCATCTCTTTTCCTCCTCCTCCGCTCTCATGTCCGCTACCGCTCTGTTGCAGAAGGCAGCACAGATGGGAGCTGCTGTTAGCAGCGGTGGAAACTCCAGTACTCCTTGTTTCAACTCACCCATGATCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCCTTCTGTGGGCTATTGGCCACCAACTGTTTGCAAAGATGTCCACAAGATCAAAATATGTTATCCCAACTATCTTCAAAGGGCAAGGCAATAGACATGGAGATGATGATCGACGACAACGACGACGACGACATTCCGATGATGAACGGAGTGTTCGATCAGCGGTCATTGCTCATGGAAGCGGCTAGGAAGACGACGACACTAGATTTGTTGGGGGATGAGGGAGGGAATAATAAAGGGATGAAATTTCAAGCACAAGATCAAAGTAGTGTGGGGTTATTGGAGGGCTTGTGGAGAATATGA 1338 46.94 MSKISGCSDDGGSFVADAEKLENQFFNGTFESHHQQPQPQLVVPKKKRNLPGTPVPDAEVVALSPETLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRKVYVCPEPSCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHTKACGSKEYKCDCGTIFSRRDSFITHRAFCDALAEEHNKLVNAHQGATTMASSTAINGPSFQPQPLSHLLSRPGILSLPLTTLPRDLMPIPPKPLNLSAGSMFSSSISNNSTTPTTFQNDNHLFSSSSALMSATALLQKAAQMGAAVSSGGNSSTPCFNSPMIHEKKGFVTTMAPSSFCGLLATNCLQRCPQDQNMLSQLSSKGKAIDMEMMIDDNDDDDIPMMNGVFDQRSLLMEAARKTTTLDLLGDEGGNNKGMKFQAQDQSSVGLLEGLWRI* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17381947 17386932 + Chy8G156240.1 Chy08g01019 232805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01019 445 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 31 393 - -
Chy08g01019 445 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Chy08g01019 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Chy08g01019 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 179 IPR013087 -
Chy08g01019 445 Gene3D Classic Zinc Finger 127 209 - -
Chy08g01019 445 Gene3D Classic Zinc Finger 57 121 - -
Chy08g01019 445 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Chy08g01019 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 393 - -
Chy08g01019 445 SMART c2h2final6 116 146 IPR013087 -
Chy08g01019 445 SMART c2h2final6 74 96 IPR013087 -
Chy08g01019 445 SMART c2h2final6 151 171 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01661 Chy-Chr1:22549641 Chy08g01019 Chy-Chr8:17381947 2.35E-109 dispersed
Chy08g01019 Chy-Chr8:17381947 Chy07g00247 Chy-Chr7:1959247 2.33E-96 dispersed
Chy08g01019 Chy-Chr8:17381947 Chy11g00664 Chy-Chr11:8175368 2.97E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18440 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01019 - - csv:101206977 817.764