Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01021 ATGATTGTTGTCTTCATTTCGATGCCTTTTTCATTGGAGAAATCTCACATTTTGATTGCTAATTCACTGTTGGATGCAACTGAGAGCTTTAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAATGGCGGCAATGAGCCTTTCATTTTGGAGAGAGTCAGAGCTCTACTTGGACTTAATAGCTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCATCTCCGTCGCCCTCGCCATCGCCAGTCACCATTTCTCCTTCTCCTGCTCCAATGGCAGCTCATCGAGTGCACATTCATGAGCATTCTCATCCTCATCAGCTGCGCTTGCACAAGAGCCGACCAAAATACAAACCGAAAAGAAAAGATCCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGTAGGAGTCGCCATTTTGTTGTGCTCTATTATTGCCTTTTGGGTGTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCTTTCTGTTAAGAGTGAAAAAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTGTTCGATCTTGGTATAGTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGGAAGGAGTGAAGAGATGTTGGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGCATGTTCATGAGGAAGATGATAGTAAATCAATACAATTTGTATCTGAGGGAACTCATTCCTCATCTGGGGATAAGGTTACTCCTGTTCAATGTTGTTCATCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCAAATCGTCGCCTTTCAAATGCTTCGGAAATTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGTCACCTTAGCAAGTAAATTGGAAACACAATGTGATGAATCTAACAAGTTATTAACTTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTCTGTTGGTTTCCAAAAGAATGTCAATGTCCCATCTTTATCTCCACCTCCACCTCCACCACCGCCACCGCCTCCTCCTCCTGCCGTCACGGATCGCTGTTCGTTTTCCCTTTCTTCACCCTTTTCAACTGGATCTACTTCTTCTTCTGCATTATTAAGATCCTCATCTCCGGCATTGTCAGATTCTTCTTCCGTATCTCCTATACCATGGAATGATCTGCCATCACCTCAAACCACTACTAAACCTTCATTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCACCAATTTTGAAAACAAGCCCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGTCATTTGGAAAAGAGGCAAATTTAAGGCCAAAACTTAAGCCTCTCCATTGGGACAAAGTAAGAGCTGCACCTGATCAATCCATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCATTATTTGGTTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGTCCTTCTCCAAGCAAGCATATACTAGAGGCAAAGAGACTTCAGAACCTAACCATTCTCTTAAAAGCCTTAAATCTCTCCACAGAACAAGTTTGTGAAGCCATAGAACAAGGGAATGGGCTGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATTGGTGAATTGGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTTGCCTTCCAAAGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCAGGAACTCATTTTCCATACTAGAGGAGGCCTGCAAGGAACTAAGATCCAGCAGACTCTTCCTAAAACTACTAGAAGCCGTGTTAAAAACAGGAAACCGAATGAACGTCGGAACAAGTAGAGGAGGCGCACGAGCATTCAAACTCGACGCTCTCCTAAAACTCTCCGACGTCAAAGGCACAGACGGCAAAACATCCCTACTCCACTTCGTAGTACAAGAAATGATCCGGTCAGAAGGGATCAGAGTATCAGGCAGCATAATGGGGAAAATCAACCAAAAAAACAAACCAAGAACAGTGGAAGAACGAGAAAACGATTACCGAAGAATGGGATTGGATTTGGTGTCGGGGTTGAGCACGGAACTGCAGAACGTGAAACGAGCGGCAACGATCGACCTGAAAGTAGTGGGGAGTTCAAGGGGGAATTTGAATGAGGGAATGAGGAAAATGGAGGAATTGGTAGGGAAGGAGTTGAGAGGGAACTTTGTGGAAAGCATGAAAGGGTTTGTGGGGTATGTGAAGAAGAGGATGGAGGAAGTGAAGAAGGATGAAGAAAGAGTAATGGGGAATGTGAGAGAGATTACAGAGTATTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCATTGAGGATTTTTGTGATCGTTAGAGATTTTCTTGGAATGTTAGATAATGTTTGTAAAAGCTTCAAGATTGGTTGTTGA 2658 42.21 MIVVFISMPFSLEKSHILIANSLLDATESFNVKELERVSGEDENGGNEPFILERVRALLGLNSLQLGNQSPSDLSPSPSPSPSPSPVTISPSPAPMAAHRVHIHEHSHPHQLRLHKSRPKYKPKRKDPREGRVRKILVAVLVSVGVAILLCSIIAFWVCKKFKSQREESMEKLSVKSEKEDKTARPKSSLDLFDLGIVGMDVEEQTHTSESEKELSVHKEGGRSEEMLDSEFDNVSVSSTKEMMHVHEEDDSKSIQFVSEGTHSSSGDKVTPVQCCSSDDEESFHSCGDSNLSNRRLSNASEISSANVITNSTCSVPTVTLASKLETQCDESNKLLTSDQSHLALFPCNSEPKMQMVPHSVGFQKNVNVPSLSPPPPPPPPPPPPPAVTDRCSFSLSSPFSTGSTSSSALLRSSSPALSDSSSVSPIPWNDLPSPQTTTKPSLPSSAIPPPPSPPPILKTSPYSFKTPPPPPSKLPQFMSFGKEANLRPKLKPLHWDKVRAAPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGNGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKINQKNKPRTVEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMRKMEELVGKELRGNFVESMKGFVGYVKKRMEEVKKDEERVMGNVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGC* 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17390620 17393827 - Chy8G156260.1 Chy08g01021 232807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01021 885 MobiDBLite consensus disorder prediction 444 476 - -
Chy08g01021 885 MobiDBLite consensus disorder prediction 365 479 - -
Chy08g01021 885 MobiDBLite consensus disorder prediction 103 123 - -
Chy08g01021 885 PANTHER FORMIN-RELATED 34 303 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy08g01021 885 MobiDBLite consensus disorder prediction 75 91 - -
Chy08g01021 885 MobiDBLite consensus disorder prediction 370 389 - -
Chy08g01021 885 Pfam Formin Homology 2 Domain 483 874 IPR015425 -
Chy08g01021 885 MobiDBLite consensus disorder prediction 204 231 - -
Chy08g01021 885 PANTHER FORMIN-RELATED 360 882 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy08g01021 885 SMART it6_source 481 883 IPR015425 -
Chy08g01021 885 MobiDBLite consensus disorder prediction 205 230 - -
Chy08g01021 885 Coils Coil 642 662 - -
Chy08g01021 885 Gene3D Formin, FH2 domain 477 882 IPR042201 -
Chy08g01021 885 PANTHER FORMIN-LIKE PROTEIN 360 882 - -
Chy08g01021 885 MobiDBLite consensus disorder prediction 391 443 - -
Chy08g01021 885 ProSiteProfiles Formin homology-2 (FH2) domain profile. 481 885 IPR015425 -
Chy08g01021 885 PANTHER FORMIN-LIKE PROTEIN 34 303 - -
Chy08g01021 885 MobiDBLite consensus disorder prediction 69 129 - -
Chy08g01021 885 SUPERFAMILY Formin homology 2 domain (FH2 domain) 494 879 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01021 - - - csv:101208374 1524.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01021 Chy-Chr8:17390620 Chy11g00235 Chy-Chr11:2211403 1.73E-129 dispersed
Chy08g01021 Chy-Chr8:17390620 Chy07g00331 Chy-Chr7:2686037 5.36E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00807 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 50.7 2.7e-187 652.9
Chy10g00056 . 467 943 FH2 protein (formin) Gene Family AT3G25500 65.6 3.6e-163 572.8
Chy11g00235 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.5 1.0e-141 501.5
Chy08g01021 . 488 880 FH2 protein (formin) Gene Family AT3G25500 51.2 2.7e-102 370.5
Chy04g00807 . 623 1072 FH2 protein (formin) Gene Family AT2G43800 58.7 6.4e-137 485.3
Chy11g00235 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.0 1.5e-125 447.6
Chy11g00585 . 322 622 FH2 protein (formin) Gene Family AT4G15200 52.2 5.1e-53 205.7
Chy04g01020 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.1e-47 188.0
Chy04g01020 . 4 949 FH2 protein (formin) Gene Family AT5G54650 50.7 2.2e-177 619.8
Chy11g00585 . 476 939 FH2 protein (formin) Gene Family AT5G54650 63.3 2.9e-161 566.2
Chy04g00807 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.4 2.3e-102 370.5
Chy11g00235 . 36 913 FH2 protein (formin) Gene Family AT5G67470 57.3 3.7e-233 805.1
Chy04g00807 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.7 7.9e-135 478.4
Chy10g00056 . 505 925 FH2 protein (formin) Gene Family AT5G67470 63.0 1.9e-128 457.2
Chy08g01021 . 488 882 FH2 protein (formin) Gene Family AT5G67470 51.9 2.9e-105 380.2
Chy10g00942 . 328 815 FH2 protein (formin) Gene Family AT1G59910 52.5 3.3e-128 456.4
Chy04g00807 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.1 4.2e-100 362.8
Chy11g00235 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 3.9e-90 329.7
Chy11g00235 . 472 870 FH2 protein (formin) Gene Family AT3G05470 52.2 2.6e-106 383.6
Chy04g01020 . 446 860 FH2 protein (formin) Gene Family AT3G05470 50.7 5.8e-106 382.5
Chy04g00803 . 932 1243 FH2 protein (formin) Gene Family AT1G42980 50.2 6.1e-68 254.6
Chy04g00803 . 1 1250 FH2 protein (formin) Gene Family AT1G31810 69.2 0.0e+00 1230.7
Chy02g02475 CCT 1 376 FH2 protein (formin) Gene Family AT1G31810 54.5 1.7e-127 454.5
Chy07g00331 . 1075 1397 FH2 protein (formin) Gene Family AT5G07650 63.8 7.7e-110 395.2
Chy12g01523 CCT 1678 1959 FH2 protein (formin) Gene Family AT5G07650 70.9 1.7e-109 394.0
Chy02g02115 . 986 1305 FH2 protein (formin) Gene Family AT5G07650 62.0 1.5e-108 391.0
Chy04g00803 . 916 1247 FH2 protein (formin) Gene Family AT5G07650 59.0 1.8e-106 384.0
Chy12g01523 CCT 1601 1959 FH2 protein (formin) Gene Family AT5G07770 63.9 6.7e-119 424.9
Chy07g00331 . 1000 1389 FH2 protein (formin) Gene Family AT5G07770 58.6 1.5e-118 423.7
Chy02g02115 . 909 1297 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Chy04g00803 . 852 1241 FH2 protein (formin) Gene Family AT5G07770 55.2 2.2e-114 409.8
Chy07g00331 . 992 1400 FH2 protein (formin) Gene Family AT3G32400 74.8 3.0e-168 588.6
Chy02g02115 . 893 1306 FH2 protein (formin) Gene Family AT3G32400 66.1 7.6e-148 520.8
Chy04g00803 . 852 1246 FH2 protein (formin) Gene Family AT3G32400 66.2 2.4e-141 499.2
Chy12g01523 CCT 1571 1962 FH2 protein (formin) Gene Family AT3G32400 57.8 6.1e-121 431.4
Chy07g00331 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 52.9 0.0e+00 1152.9
Chy02g02115 . 47 1306 FH2 protein (formin) Gene Family AT2G25050 50.7 4.5e-284 974.5
Chy02g02475 CCT 1 374 FH2 protein (formin) Gene Family AT2G25050 63.6 9.5e-141 498.4
Chy07g00331 . 1001 1390 FH2 protein (formin) Gene Family AT5G07780 54.4 3.3e-105 379.0
Chy12g01523 CCT 1602 1959 FH2 protein (formin) Gene Family AT5G07780 56.7 2.7e-102 369.4
Chy04g00803 . 853 1242 FH2 protein (formin) Gene Family AT5G07780 52.5 1.3e-101 367.1
Chy02g02115 . 916 1297 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Chy02g02475 CCT 1 662 FH2 protein (formin) Gene Family AT5G07740 59.3 7.6e-197 685.3
Chy07g00331 . 1074 1397 FH2 protein (formin) Gene Family AT5G07760 65.5 4.9e-110 396.0
Chy02g02115 . 985 1305 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Chy12g01523 CCT 1677 1959 FH2 protein (formin) Gene Family AT5G07760 71.4 7.1e-109 392.1
Chy04g00803 . 926 1247 FH2 protein (formin) Gene Family AT5G07760 60.4 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g01021 Chy_Chr08 FPKM 0.0 1.265288 0.47156 0.0 2.703033 1.735824 1.197676 0.122694 0.0 0.0