Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01044 ATGGGTTATAAGGATGATGATTCTCAAAACAAGAAAAGATACGCCATCATTGGTGTGTCGTCGATGTTACTAGTGGCGATGGTGGTGGCGGTGACGGTTGGTGTTAACCTAAACCAGGATGAGACAAGTGATCCAGCTACCGGAAATAAGTCTCATGAAATATCTTCTTCAATGAAAGCTATTAAAGCCATTTGTCAACCCACTGATTACAAACAAGAATGTGTTGCTAGTCTTAAGGCTACTGGCAACAATTCTTCAGATCCAAAGGAATTGGTTCAAGCTGGTTTTAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCGCCTTGAATGAGCTTGAGAAAGATCCTAGAGCCTCCAAAGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTCGCCATCGATGAGCTTAAATACTCCATGAACAAACTCGGAGAGTTTGATATTAGTAAACTGGATGAGATGTTGATCGATATTAGGATTTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCGCAAACACAACAGGAAATGCAGCAGAGAAGATGAAGAAGGCATTGAAAACTTCAATGAAGTTGAGTAGCAACGGGTTGGCGATGGTGTCGCAGATCTCGTCGATGTTGACAGAGTTGCAGATTCCAGGGATTAGCCGAAGGCGACTTCTCGAGATTCCAGTCCTTGGGCACGATGATTATCCTGACTGGGCGAATCCAGGGATGAGACGACTCCTAGCTGCAGGGTCGAAAGTGAAGCCCAATGTTGTGGTGGCTAAGGATGGAAGTGGTCAATTCAAGACCATTCAAGAGGCTCTTGACCAAGTTCCAAAGAGAAAGAACAATGCAACTTATGTGATTCATATCAAGGCCGGAGTGTATCAAGAATATGTACAAGTTAAGAAAACTCTCACCCACTTGATGCTCATTGGAGATGGCCCCAAAAAGACCATTATCACCGGAAACAAGAACTTTATCGATGGCACACCCACTTTCAAAACCGCAACCGTTGCTGTGACAGCAGAGCACTTCATGGCAAGAGACATCGGGTTCGAGAACACGGCAGGACCACAAAAGCACCAAGCCGTCGCACTACGAGTCCAAGCAGACAAAGCCGTATTCTACAACTGCGAAATGCATGGTTACCAAGACACTCTCTACGTACACACCATGCGTCAATTCTACCGTGATTGCACGGTCTCAGGAACCATCGACTTCATCTTCGGCGACGCAGCCGCCATCTTCCAAAGCTGCACCTTCCTAGTTCGCAAGCCGCTACCAAACCAACAATGCATCGTAACAGCACACGGACGCAAAGAGCGCCGTCAACCATCAGCACTCATCATCCAAAACTGTTCGTTCAAGCCCCATGCCGACCTGGTCCCGGTACAAAAGCAATTCCGATCCTTCCTTGGAAGACCATGGAAGGAATATTCAAGAACAATCATAATGGAATCATACATTGGTGATTTGATTCAGCCAGAAGGATGGTTGCCATGGGCAGGTGATTGGGGATTAAAGACATGCTTTTACACAGAGTATAATAATTATGGACCAGGTTCTGATAAATCAAAGAGGGTGAAATGGAGAGGGATTAAGAACATTACACCACAACATGCTTTGGATTTTACTCCTGGCCGGTTCGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCTTATGTTTCTGGACTGACCAGGACGGGCGGTGCTACGGCGGCGGCTCATTGA 1752 46.18 MGYKDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSDPATGNKSHEISSSMKAIKAICQPTDYKQECVASLKATGNNSSDPKELVQAGFKAAMKLIQAAANKSVALNELEKDPRASKALAGCKELMDFAIDELKYSMNKLGEFDISKLDEMLIDIRIWLSATITYQETCLDGFANTTGNAAEKMKKALKTSMKLSSNGLAMVSQISSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGSKVKPNVVVAKDGSGQFKTIQEALDQVPKRKNNATYVIHIKAGVYQEYVQVKKTLTHLMLIGDGPKKTIITGNKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPQKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTVSGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKPHADLVPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEYNNYGPGSDKSKRVKWRGIKNITPQHALDFTPGRFVMGDRWIKPTGVPYVSGLTRTGGATAAAH* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17539007 17540975 - Chy8G156490.1 Chy08g01044 232830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01044 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Chy08g01044 583 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Chy08g01044 583 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Chy08g01044 583 Gene3D - 254 572 IPR012334 -
Chy08g01044 583 PANTHER PECTINESTERASE 16 574 - -
Chy08g01044 583 CDD PMEI-like_3 63 214 - -
Chy08g01044 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 212 IPR006501 GO:0004857
Chy08g01044 583 SMART PMEI_2 56 208 IPR006501 GO:0004857
Chy08g01044 583 Pfam Pectinesterase 261 558 IPR000070 GO:0030599|GO:0042545
Chy08g01044 583 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Chy08g01044 583 PANTHER PECTINESTERASE 16 574 - -
Chy08g01044 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Chy08g01044 583 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01044 Chy-Chr8:17539007 Chy11g01528 Chy-Chr11:21877871 0 dispersed
Chy04g00725 Chy-Chr4:8913355 Chy08g01044 Chy-Chr8:17539007 2.35E-139 transposed
Chy12g00390 Chy-Chr12:4598161 Chy08g01044 Chy-Chr8:17539007 1.48E-149 transposed
Chy06g00724 Chy-Chr6:4926168 Chy08g01044 Chy-Chr8:17539007 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01044 K01051 - csv:101207393 1129.78