Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01045 ATGTCAAGAGTTTCTTTAGCCATTCATATTTTTATGTTGATCTTTTTGCCTGTGTTACAAGTTTCCTGCTTCGATGTTAATGTTATTTACCCAGATGTACAAAATAATGTTACACAGTCCATGATTTCTCAGATTTGTGCTGATATCGAAGATCGAAATTCATGCATTTCAAACATACAACTTGAGATGGGAAGAAGTGTGAACTCGAATCCAAATTCTGTCTTGAGTGCTGCAATTAGAGCAACTATTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATTGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGGCAGAGCTGGCATGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTAAGCGCCGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCACATTGTAGGTTTCATTAGAGGTAGTTTAAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCACCGAATCAAACGATGGAGAAAACTAAAAGTTCAGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTTGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAATCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAGCTCCAAGTTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGAAAGAAAACCAACATCATGTTTATTGGAGACGGTATCGGAGAAACAATAGTGACAGGAAGTCGTAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGATATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAGGCAGTGGCACTCCGTGTCGACTCCGATCAGTCAGCCTTCTTCCGGTGCAGCTTCGAAGGTCATCAAGACACCCTTTACGTCCACTCCCTCCGCCAATTTTACAGGGAATGCAACATATACGGCACCATAGACTACATTTTCGGCAACGGGGCAGCTGTATTCCAAAAATGCAACATCTACACCAGAGTTCCTCTCCCACTCCAGAAGGTCACAATCACTGCACAAGGTCGAAAATCTCCACACCAGAGTACGGGTTTTTCAATCCAAGACAGCTTTATTTATGCAACACAACCAACATATCTTGGAAGACCATGGAAGCTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAGTATAAAAACTATGGACCTGGTGCATCCCTATCAGGTCGAGTTAAATGGCCTGGGTACCATAATATTCAAGACCCTACCATGGCTAGATTCTTCACCTCCGAGCACTTCATCGACGGTCGAACATGGTTGCCAAAGACGGGTATTAAGTTCACATTGGGCTTGAGTAACTAA 1632 43.2 MSRVSLAIHIFMLIFLPVLQVSCFDVNVIYPDVQNNVTQSMISQICADIEDRNSCISNIQLEMGRSVNSNPNSVLSAAIRATINEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVAELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPPNQTMEKTKSSEFPDWMMDSEHKLVKSHPRNVHVDAIVALDGSGDFRSITEAVNEAPSYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGSRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHNIQDPTMARFFTSEHFIDGRTWLPKTGIKFTLGLSN* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17543352 17545120 - Chy8G156500.1 Chy08g01045 232831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01045 543 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 10 540 - -
Chy08g01045 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Chy08g01045 543 PANTHER PECTINESTERASE 10 540 - -
Chy08g01045 543 CDD PMEI-like_4 69 196 - -
Chy08g01045 543 Pfam Pectinesterase 239 526 IPR000070 GO:0030599|GO:0042545
Chy08g01045 543 Gene3D - 234 541 IPR012334 -
Chy08g01045 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 197 IPR035513 -
Chy08g01045 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 197 IPR006501 GO:0004857
Chy08g01045 543 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Chy08g01045 543 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
Chy08g01045 543 Pfam Plant invertase/pectin methylesterase inhibitor 41 192 IPR006501 GO:0004857
Chy08g01045 543 SUPERFAMILY Pectin lyase-like 238 540 IPR011050 -
Chy08g01045 543 SMART PMEI_2 37 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02299 Chy-Chr6:26925991 Chy08g01045 Chy-Chr8:17543352 1.21E-171 dispersed
Chy08g01045 Chy-Chr8:17543352 Chy01g01719 Chy-Chr1:22981477 1.19E-140 dispersed
Chy08g01045 Chy-Chr8:17543352 Chy06g01208 Chy-Chr6:10749051 1.14E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01045 K01051 - csv:101202977 1098.57