Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01063 ATGGAATTCCATCGGTTTCAGCCGCTTGTTCTTTCTGTCTCCGCCGTCTTGGGTCGTCGGAATTTGGCAGAAGTTTCATGTTTCCGATCAACGCTTCAGATTCCGCTAGGATTAGGACGATCCGACAAGTACACACGAAACAGACTGATGATCGGAAAGGCGATGAAGCACTTGTTCTTAAAGTTCAATGAACTAACAAAGTCACTAACTCCTAAGAAATGGAGAAACTCTGAGAATGCTTCTGTTGTAAATGGAAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATAAATATCGATGGTTCGAGCAATTTTGTCTCGAGTTTTTCAAAGAGGGGTGAGAAAGGAATCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGTCAAAAAGATGTGATATTTTGTGGGGTTTTTGATGGCCATGGACCATGGGGCCATTTTGTTGCAAAAGAGGTTAGAGAGTCAATGCCAATTGCTCTACTTTGCAACTGGGAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAACAAAAACAAATCTACACTTCAATTTGTTGGAGCGTTCCTATATAGAAGCATGTTCTGTGGTCGATCAAGAACTTGAGCGACATCCAAAAATCGACACATTTCATAGCGGAACAACGGCCCTTTCCATTGTTCGACAAGATGATACAATTGTTATTGCAAACCTTGGCGACTCTCGAGCTGTGTTGGCTACAACTTCTAGTGATGGAAATTCAATGTTGTCACCAATTCAGCTCACTATCGATTTCAAGCCAAATCTACCTCAAGAGGCTGAGAGGATAACACAATGCAATGGGAGGGTTTTTTGCTTGCAAGATGAACCAGGGACTCAACGTCTTTGGTTGCCGAATGGGAAAATGTCAGGGCTATCAATATCGAGATCGTTTGGCAATTTCTGCTTTAAGCATTTTGGACTTATTTCCATGCCTGATGTAACACAAAGAAGTGTAACCAACAAAGACTTATTTGTTATACTTGCAACTGATGGGATCGTACATTCGACGATAGATCGAAAAAAGTCTGCTCGACGATTGGTTGATTATGCAACTTGTGCATGGAAGCGAAAGAGGCCTGGAATTGCAGCGGATGACATGTCAGACTTCGTTTTCGTAGACTTGTGTGTTGCCATGCCTTATATTGTCAGTTGTGGAAGGATTTTTGAATTATTAGGCGAGCGAGAACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACAGACAACACCATCAGTGCAATATGTGTGCTGAAGTGATGGCTTGGATAATTATTCAACGTTTGCTTGTAGTGGCAAGTACGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATGCGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTTATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAACGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGCGATGGAAACCTTGTCGTTCCTTCTAGTATTGACTTGAATGGATTGGAACGCTTCAGCAGTCTGTTGATCGACTTTATGAACGGTGAAGTTGAAACTAGGGCCCTTCATTCCGAGAAGAGAAAAAACCAAAAGCCTGCCTAG 2043 43.22 MEFHRFQPLVLSVSAVLGRRNLAEVSCFRSTLQIPLGLGRSDKYTRNRLMIGKAMKHLFLKFNELTKSLTPKKWRNSENASVVNGREAAEAMAKSAKKKDLIIHGSGSINIDGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDVIFCGVFDGHGPWGHFVAKEVRESMPIALLCNWEEALVQTSLHPHLELNSTKTNLHFNLLERSYIEACSVVDQELERHPKIDTFHSGTTALSIVRQDDTIVIANLGDSRAVLATTSSDGNSMLSPIQLTIDFKPNLPQEAERITQCNGRVFCLQDEPGTQRLWLPNGKMSGLSISRSFGNFCFKHFGLISMPDVTQRSVTNKDLFVILATDGIVHSTIDRKKSARRLVDYATCAWKRKRPGIAADDMSDFVFVDLCVAMPYIVSCGRIFELLGEREPVSQDFQNQEEVGQEDETKQAYSSLDSVEDRQHHQCNMCAEVMAWIIIQRLLVVASTQTSSKFWLSTGASEGDNDVEKNDGEEDDYDAFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFYGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGNLVVPSSIDLNGLERFSSLLIDFMNGEVETRALHSEKRKNQKPA* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17753092 17763259 - Chy8G156680.1 Chy08g01063 232849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01063 680 CDD SSB_OBF 534 634 IPR000424 GO:0003697
Chy08g01063 680 Gene3D - 529 640 IPR012340 -
Chy08g01063 680 SUPERFAMILY Nucleic acid-binding proteins 528 635 IPR012340 -
Chy08g01063 680 SUPERFAMILY PP2C-like 117 393 IPR036457 -
Chy08g01063 680 Pfam Protein phosphatase 2C 142 358 IPR001932 -
Chy08g01063 680 Pfam Single-strand binding protein family 530 633 IPR000424 GO:0003697
Chy08g01063 680 ProSiteProfiles Single-strand binding (SSB) domain profile. 530 639 IPR000424 GO:0003697
Chy08g01063 680 ProSiteProfiles PPM-type phosphatase domain profile. 117 399 IPR001932 -
Chy08g01063 680 Gene3D - 110 400 IPR036457 -
Chy08g01063 680 SMART PP2C_4 108 398 IPR001932 -
Chy08g01063 680 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 55 394 - -
Chy08g01063 680 PANTHER ALPHABET, ISOFORM E-RELATED 55 394 - -
Chy08g01063 680 MobiDBLite consensus disorder prediction 487 515 - -
Chy08g01063 680 CDD PP2Cc 116 400 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01063 Chy-Chr8:17753092 Chy11g01535 Chy-Chr11:21916084 4.60E-96 dispersed
Chy08g00566 Chy-Chr8:13244932 Chy08g01063 Chy-Chr8:17753092 8.91E-10 transposed
Chy12g01457 Chy-Chr12:18550819 Chy08g01063 Chy-Chr8:17753092 7.41E-24 transposed
Chy05g01064 Chy-Chr5:15162792 Chy08g01063 Chy-Chr8:17753092 8.75E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01063 - - csv:101205485 639.802