Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01078 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGTAAAATCGCTATTGATGCCAGCATGAGTATTTACCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGATGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCTAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAGAGTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGACGATTGGCCTTATAAAGAAGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGACGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGGAAACATCAGAAAAGCCTACCAAACAAGCAATAACGAAGAAATCGAAGTTCGGTGGTAGTAAAAGAAAAGCATAG 1152 41.75 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKETSEKPTKQAITKKSKFGGSKRKA* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17922892 17942771 - Chy8G156830.1 Chy08g01078 232864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01078 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Chy08g01078 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Chy08g01078 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Chy08g01078 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Chy08g01078 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Chy08g01078 383 SMART xpgn3 1 108 IPR006085 GO:0004518
Chy08g01078 383 PANTHER FLAP ENDONUCLEASE 1 1 377 - -
Chy08g01078 383 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Chy08g01078 383 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Chy08g01078 383 Gene3D - 223 286 - -
Chy08g01078 383 CDD PIN_FEN1 4 332 - -
Chy08g01078 383 MobiDBLite consensus disorder prediction 336 383 - -
Chy08g01078 383 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Chy08g01078 383 SMART xpgineu 147 219 IPR006086 GO:0004518
Chy08g01078 383 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Chy08g01078 383 Gene3D - 10 222 - -
Chy08g01078 383 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Chy08g01078 383 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Chy08g01078 383 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Chy08g01078 383 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Chy08g01078 383 SMART 53exo3 29 299 IPR002421 GO:0003677
Chy08g01078 383 MobiDBLite consensus disorder prediction 337 356 - -
Chy08g01078 383 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 377 IPR006084 -
Chy08g01078 383 CDD H3TH_FEN1-Euk 222 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01078 Chy-Chr8:17922892 Chy12g00021 Chy-Chr12:271386 1.49E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01078 K04799 - csv:101204273 757.288