Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01097 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACGTACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACATGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATTCGCATTGACTCTCTTAAAAAACCATCTTCTTCACAACCTCAAACTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGATTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 675 44.44 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITWLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSSSQPQTQVQAQAQAPPTQPQTAAWLMELVSPQDQMGFVGDDMILPFGDQTYNHNNAMWSNAFFP* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18112967 18113775 + Chy8G157020.1 Chy08g01097 232883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01097 224 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy08g01097 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Chy08g01097 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 MobiDBLite consensus disorder prediction 157 179 - -
Chy08g01097 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Chy08g01097 224 Coils Coil 87 114 - -
Chy08g01097 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 183 - -
Chy08g01097 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01097 - - - csv:101203059 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01846 Chy-Chr4:24653589 Chy08g01097 Chy-Chr8:18112967 7.66E-40 dispersed
Chy08g01097 Chy-Chr8:18112967 Chy12g00563 Chy-Chr12:7896634 1.57E-73 dispersed
Chy08g01097 Chy-Chr8:18112967 Chy02g00774 Chy-Chr2:4800070 5.97E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18443 PF00319 SRF-TF 5.10E-18 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g01097 Chy_Chr08 FPKM 5.270092 5.306326 0.497188 0.580051 1.127394 0.587523 0.788708 1.730671 1.361931 0.988511