Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01097 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACGTACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACATGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATTCGCATTGACTCTCTTAAAAAACCATCTTCTTCACAACCTCAAACTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGATTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 675 44.44 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITWLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSSSQPQTQVQAQAQAPPTQPQTAAWLMELVSPQDQMGFVGDDMILPFGDQTYNHNNAMWSNAFFP* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18112967 18113775 + Chy8G157020.1 Chy08g01097 232883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01097 224 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy08g01097 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Chy08g01097 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 MobiDBLite consensus disorder prediction 157 179 - -
Chy08g01097 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Chy08g01097 224 Coils Coil 87 114 - -
Chy08g01097 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 183 - -
Chy08g01097 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy08g01097 224 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01846 Chy-Chr4:24653589 Chy08g01097 Chy-Chr8:18112967 7.66E-40 dispersed
Chy08g01097 Chy-Chr8:18112967 Chy12g00563 Chy-Chr12:7896634 1.57E-73 dispersed
Chy08g01097 Chy-Chr8:18112967 Chy02g00774 Chy-Chr2:4800070 5.97E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18443 PF00319 SRF-TF 5.10E-18 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01097 - - csv:101203059 412.149