Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g01099 ATGGATTATCGAGGTTTCAGTAGTAGACTGGAAAAAAGCAACCCAAGTAAAGGCTATGCTCGGGAGCAGGAATCTCTTGGTGATGACTTCATAGATGATTTTCGCTTGCCCATCAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACGTCATCAAATGTGGGATATAGGCTTCTTCAGAAGATGGGCTGGAAAGGGAAAGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGACCCCAAACTCGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAACGGAAAAAGCTTGATGTTGAGGTGGAGGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAACTGGCAATGGAGTTTGAAGCCCATCTCAGCTCATATGATCATAATCACAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGGGATGACAGAAACAAACGGGAACAGCAACGGGAAGAGAGAGAGATGGCCAAATTTGCTCAAATTGCAGATGCCCGTAAGAAGCAGCAGCAGTTGTTGGAGCAACAAGCAAGGGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAATGCTACATCAGTTGCAGATCAGGATCAGCGGAAAACATTGAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGCCAAAAAGAAACCGAAAGTAGCACCTGTAGCTTCTGTTTTTGGGAACGATAGCGATGATGAATAG 900 42.11 MDYRGFSSRLEKSNPSKGYAREQESLGDDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKQQQLLEQQARAAEAPVSTELRNATSVADQDQRKTLKFGFSSKGGTSKNIFGGAKKKPKVAPVASVFGNDSDDE* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18132476 18135240 + Chy8G157040.1 Chy08g01099 232885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g01099 299 MobiDBLite consensus disorder prediction 1 24 - -
Chy08g01099 299 SUPERFAMILY beta-beta-alpha zinc fingers 138 191 IPR036236 -
Chy08g01099 299 Coils Coil 220 240 - -
Chy08g01099 299 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 7 299 - -
Chy08g01099 299 MobiDBLite consensus disorder prediction 190 220 - -
Chy08g01099 299 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Chy08g01099 299 MobiDBLite consensus disorder prediction 190 253 - -
Chy08g01099 299 SMART G-patch_5 60 105 IPR000467 GO:0003676
Chy08g01099 299 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Chy08g01099 299 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Chy08g01099 299 MobiDBLite consensus disorder prediction 263 282 - -
Chy08g01099 299 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01099 Chy-Chr8:18132476 Chy11g00532 Chy-Chr11:5852850 8.80E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g01099 - - csv:101216939 559.681