Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00018 ATGGGGAGAGGAAAGATAGAGATAAAGAGAATAGAGAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAACTGCGTCAACAGATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCACGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTAGAGAGGGTTCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATACAAGCATTGGCTAACTCTCGCAATTTCTTCTCTCCCAATATTATGGAACCAACTGGACCTGTTTCTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGTGCGAGTGCGGGGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTTCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCCGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCATCTACCAAGAAGGATGGTCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCAAGTGCTGAAATACAATTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTACGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTTAAAAGGGGTGGGGCAGCATCATCTAGAAAGCCTGAGTCAAATTCCATGAAGCGAGGGATGGAGAAAAAGAAGTATATCTTAAAGGACAGTGTAAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTAGTGCCCAGGCGAGAGGATCAGTCCGCTACTTCAAGTGGAATTGGAATTTCAGATGTTGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAAGGAAAAGCGCGAGATATATCTCATGTTTCTGATGACATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCATAGGCGTGAGGCTGGTGGAGGCGTGATCAGAAGCATTCTTTTAAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCAGTCTCATCAAAAGATTGAGATCCTGAAGTCAGACAACGGGAAGCGTCCACCTCGTCCCACTAATGCTCGATCTGGGTCTAATGATATCTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTTCAGACAATAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAGAAACGAATAAGAAACAAAGATAGACCTGATCGTGGAGTCTGGGCACCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTCCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTGCAACCATTGTGAGTGGGCGTAACAGTTCAGTGGAAAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTTGTTTATTATATTGACAAGGACGTGTATTGTTTTCCATGGGATCATGACCGTAACGATGTCTATGTTATTCAACAGATAGTGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGGAAGACTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA 2532 43.4 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALANSRNFFSPNIMEPTGPVSFSHQDKKMLHLGASAGGVFQMKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYIDKDVYCFPWDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFRELDWKTCNCFVVYRWLQNTRFSG* 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 204900 219634 - Chy9G157340.1 Chy09g00018 232915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00018 843 MobiDBLite consensus disorder prediction 509 529 - -
Chy09g00018 843 MobiDBLite consensus disorder prediction 571 592 - -
Chy09g00018 843 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Chy09g00018 843 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Chy09g00018 843 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g00018 843 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g00018 843 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 Gene3D - 234 330 IPR012677 -
Chy09g00018 843 MobiDBLite consensus disorder prediction 597 636 - -
Chy09g00018 843 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Chy09g00018 843 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 234 745 IPR039722 GO:0000184
Chy09g00018 843 SUPERFAMILY RNA-binding domain, RBD 241 330 IPR035979 GO:0003676
Chy09g00018 843 MobiDBLite consensus disorder prediction 401 435 - -
Chy09g00018 843 Pfam Smg-4/UPF3 family 239 401 IPR005120 -
Chy09g00018 843 MobiDBLite consensus disorder prediction 707 734 - -
Chy09g00018 843 MobiDBLite consensus disorder prediction 640 660 - -
Chy09g00018 843 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 234 745 - -
Chy09g00018 843 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy09g00018 843 MobiDBLite consensus disorder prediction 561 660 - -
Chy09g00018 843 CDD RRM_like_Smg4_UPF3 242 327 - -
Chy09g00018 843 Coils Coil 124 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00197 Chy-Chr2:1342093 Chy09g00018 Chy-Chr9:204900 7.97E-90 dispersed
Chy02g00774 Chy-Chr2:4800070 Chy09g00018 Chy-Chr9:204900 1.03E-41 dispersed
Chy07g01771 Chy-Chr7:21296543 Chy09g00018 Chy-Chr9:204900 2.39E-33 dispersed
Chy08g00183 Chy-Chr8:4250489 Chy09g00018 Chy-Chr9:204900 8.12E-36 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy09g00018 Chy-Chr9:204900 5.57E-26 dispersed
Chy09g00018 Chy-Chr9:204900 Chy11g00996 Chy-Chr11:14088961 2.09E-79 dispersed
Chy09g00018 Chy-Chr9:204900 Chy09g00023 Chy-Chr9:240684 9.39E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18445 PF03467 Smg4_UPF3 1.40E-50 CL0221 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00018 K14328 - csv:101208317 978.008