Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00032 ATGGGCTGTATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCATAAAGAGCCTGAAAAAGAATTGAACAAATCATCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGTTGTTAGAGATTCAGTTGACAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCTGTAAAGGCTGCAAAAGCAAATAACGATAATGCTTCAGTAGGTGGAAAGCAGCCTGACATTTTTAGGTTAGCTAGCTTGTCTAAAGGGGCTGAAACTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGGCGGGCTGACTCCTTTGAAAAGTTGGATAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATCGTGGCACTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATTTATATTTTGCGCAAACTTGATCATCCGAATGTTATGAAGCTTGAGAGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTCGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGTTACGTGCAACAATTGCTGCATGGACTCGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGGTTCAAATCTTCTAGTTGACAATAATGGTGTGCTCAAGATTGGAGACTTCGGTCTTGCTACATTTTTTCAGCCTGATCAAAAGCAGCCATTGACGAGTCGGGTTGTGACGTTGTGGTACAGAGCGCCCGAGCTTTTGCTTGGTGCTACCCAATATGGTCCGGGCATAGATCTCTGGAGCTGTGGTTGTATCGTCGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAGCAAATGCATAAGATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACTAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTCCTTCAGCTCTGGCTCTTGTGAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCGGCTACTTTAGCCCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGCGACCCGTCAAGCTTACCAAAATATCCTCCGAGCAAAGAATTCGATGCTAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAAGCAGAAGCTGTGAAGGGACGTCATCCTGAATCAGTAAGAAGGGGCTCAAGGGACACAAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTCCTATAAAGGCACTCCCAATCTCGAAAAAAACGAGTGCGAAATTCAACCCTCAAGAGGACGGTGAGCCTTCGAGAGTTGCGCAGAATCGGTACAACCATTCAACATCTATGGTGCACCCAACCGTTGCAGGTTCATGGGGTAAGCCTACTGGAGCCTTGAGAAATCATGCAGAGTTGAAGACACAGAAATCTCAGATGCATCGGTCAGTGGGAGATTTATCAGCCTCTTCTCTTAAGAAGGAAGATTCAGTGTCTAATAAAGATTCCGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATACAGCAGGCTTTTCGAAAGGCACGACTTGACAAAGCAAAGACGACCAAGAGTTATGATGATTAG 1923 44.67 MGCICSRDSSEPEDSSHKEPEKELNKSSVQLVAPSPSKREDMLLEIQLTRQASKANGGSVHKAKANGGSVHRAKEDDESENKSVKAAKANNDNASVGGKQPDIFRLASLSKGAETELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLESLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPGIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCLSETFKSFPPSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDIPIKALPISKKTSAKFNPQEDGEPSRVAQNRYNHSTSMVHPTVAGSWGKPTGALRNHAELKTQKSQMHRSVGDLSASSLKKEDSVSNKDSGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTTKSYDD* 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 301478 305578 - Chy9G157480.1 Chy09g00032 232929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00032 640 Coils Coil 447 467 - -
Chy09g00032 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Chy09g00032 640 MobiDBLite consensus disorder prediction 1 97 - -
Chy09g00032 640 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Chy09g00032 640 SMART serkin_6 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 MobiDBLite consensus disorder prediction 558 587 - -
Chy09g00032 640 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Chy09g00032 640 PANTHER CELL DIVISION PROTEIN KINASE 79 630 - -
Chy09g00032 640 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 79 630 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 68 85 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 458 495 - -
Chy09g00032 640 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Chy09g00032 640 MobiDBLite consensus disorder prediction 10 25 - -
Chy09g00032 640 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 458 483 - -
Chy09g00032 640 Coils Coil 613 633 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 562 576 - -
Chy09g00032 640 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 CDD STKc_CDK9_like 145 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00280 Chy-Chr3:2978617 Chy09g00032 Chy-Chr9:301478 1.69E-155 dispersed
Chy05g00037 Chy-Chr5:253177 Chy09g00032 Chy-Chr9:301478 7.44E-121 dispersed
Chy06g01157 Chy-Chr6:10239150 Chy09g00032 Chy-Chr9:301478 0 dispersed
Chy09g00032 Chy-Chr9:301478 Chy10g00271 Chy-Chr10:6694529 0 dispersed
Chy12g01523 Chy-Chr12:18995713 Chy09g00032 Chy-Chr9:301478 6.24E-173 dispersed
Chy09g00032 Chy-Chr9:301478 Chy12g01147 Chy-Chr12:16403329 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71448 PF00069 Pkinase 5.20E-70 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00032 K08819 - csv:101208709 1277.69