Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00032 ATGGGCTGTATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCATAAAGAGCCTGAAAAAGAATTGAACAAATCATCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGTTGTTAGAGATTCAGTTGACAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCTGTAAAGGCTGCAAAAGCAAATAACGATAATGCTTCAGTAGGTGGAAAGCAGCCTGACATTTTTAGGTTAGCTAGCTTGTCTAAAGGGGCTGAAACTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGGCGGGCTGACTCCTTTGAAAAGTTGGATAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATCGTGGCACTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATTTATATTTTGCGCAAACTTGATCATCCGAATGTTATGAAGCTTGAGAGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTCGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGTTACGTGCAACAATTGCTGCATGGACTCGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGGTTCAAATCTTCTAGTTGACAATAATGGTGTGCTCAAGATTGGAGACTTCGGTCTTGCTACATTTTTTCAGCCTGATCAAAAGCAGCCATTGACGAGTCGGGTTGTGACGTTGTGGTACAGAGCGCCCGAGCTTTTGCTTGGTGCTACCCAATATGGTCCGGGCATAGATCTCTGGAGCTGTGGTTGTATCGTCGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAGCAAATGCATAAGATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACTAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTCCTTCAGCTCTGGCTCTTGTGAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCGGCTACTTTAGCCCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGCGACCCGTCAAGCTTACCAAAATATCCTCCGAGCAAAGAATTCGATGCTAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAAGCAGAAGCTGTGAAGGGACGTCATCCTGAATCAGTAAGAAGGGGCTCAAGGGACACAAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTCCTATAAAGGCACTCCCAATCTCGAAAAAAACGAGTGCGAAATTCAACCCTCAAGAGGACGGTGAGCCTTCGAGAGTTGCGCAGAATCGGTACAACCATTCAACATCTATGGTGCACCCAACCGTTGCAGGTTCATGGGGTAAGCCTACTGGAGCCTTGAGAAATCATGCAGAGTTGAAGACACAGAAATCTCAGATGCATCGGTCAGTGGGAGATTTATCAGCCTCTTCTCTTAAGAAGGAAGATTCAGTGTCTAATAAAGATTCCGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATACAGCAGGCTTTTCGAAAGGCACGACTTGACAAAGCAAAGACGACCAAGAGTTATGATGATTAG 1923 44.67 MGCICSRDSSEPEDSSHKEPEKELNKSSVQLVAPSPSKREDMLLEIQLTRQASKANGGSVHKAKANGGSVHRAKEDDESENKSVKAAKANNDNASVGGKQPDIFRLASLSKGAETELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLESLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPGIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCLSETFKSFPPSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDIPIKALPISKKTSAKFNPQEDGEPSRVAQNRYNHSTSMVHPTVAGSWGKPTGALRNHAELKTQKSQMHRSVGDLSASSLKKEDSVSNKDSGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTTKSYDD* 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 301478 305578 - Chy9G157480.1 Chy09g00032 232929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00032 640 Coils Coil 447 467 - -
Chy09g00032 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Chy09g00032 640 MobiDBLite consensus disorder prediction 1 97 - -
Chy09g00032 640 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Chy09g00032 640 SMART serkin_6 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 MobiDBLite consensus disorder prediction 558 587 - -
Chy09g00032 640 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Chy09g00032 640 PANTHER CELL DIVISION PROTEIN KINASE 79 630 - -
Chy09g00032 640 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 79 630 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 68 85 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 458 495 - -
Chy09g00032 640 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Chy09g00032 640 MobiDBLite consensus disorder prediction 10 25 - -
Chy09g00032 640 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 458 483 - -
Chy09g00032 640 Coils Coil 613 633 - -
Chy09g00032 640 MobiDBLite consensus disorder prediction 562 576 - -
Chy09g00032 640 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00032 640 CDD STKc_CDK9_like 145 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00032 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101208709 1277.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00280 Chy-Chr3:2978617 Chy09g00032 Chy-Chr9:301478 1.69E-155 dispersed
Chy05g00037 Chy-Chr5:253177 Chy09g00032 Chy-Chr9:301478 7.44E-121 dispersed
Chy06g01157 Chy-Chr6:10239150 Chy09g00032 Chy-Chr9:301478 0 dispersed
Chy09g00032 Chy-Chr9:301478 Chy10g00271 Chy-Chr10:6694529 0 dispersed
Chy12g01523 Chy-Chr12:18995713 Chy09g00032 Chy-Chr9:301478 6.24E-173 dispersed
Chy09g00032 Chy-Chr9:301478 Chy12g01147 Chy-Chr12:16403329 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01254 . 1 295 Core Cell Cycle Gene Families AT3G48750 85.4 2.4e-149 525.0
Chy07g00426 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.7 1.3e-94 343.2
Chy08g00540 . 1 309 Core Cell Cycle Gene Families AT3G48750 54.8 1.4e-93 339.7
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT3G54180 82.1 2.1e-151 531.9
Chy07g00426 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.3 8.7e-118 420.2
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT3G54180 53.8 7.0e-91 330.9
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT2G38620 69.5 5.2e-121 430.6
Chy07g00426 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.2 1.3e-92 336.3
Chy07g00426 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 3.7e-156 547.7
Chy08g00540 . 1 309 Core Cell Cycle Gene Families AT1G76540 64.4 1.1e-115 413.3
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.9e-93 337.0
Chy07g00426 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 1.2e-159 559.3
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT1G20930 64.9 3.1e-118 421.8
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 5.6e-96 347.8
Chy05g00037 . 1 514 Core Cell Cycle Gene Families AT5G10270 73.9 3.3e-215 744.6
Chy04g01449 . 84 599 Core Cell Cycle Gene Families AT5G10270 73.1 5.5e-210 727.2
Chy12g01147 . 88 404 Core Cell Cycle Gene Families AT5G10270 53.5 7.4e-98 354.8
Chy02g01127 CCT,ECH 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.6e-97 353.6
Chy06g00655 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.6 1.1e-96 350.9
Chy09g00032 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 2.4e-96 349.7
Chy10g00271 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.2 1.9e-93 340.1
Chy05g01169 CCT,ECH 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 3.2e-93 339.3
Chy06g01157 . 180 482 Core Cell Cycle Gene Families AT5G10270 54.9 7.1e-93 338.2
Chy12g01523 CCT 120 438 Core Cell Cycle Gene Families AT5G10270 50.7 1.3e-91 334.0
Chy11g01133 . 142 358 Core Cell Cycle Gene Families AT5G10270 56.0 1.1e-69 261.2
Chy05g00037 . 65 512 Core Cell Cycle Gene Families AT5G64960 70.8 3.4e-174 608.2
Chy04g01449 . 148 597 Core Cell Cycle Gene Families AT5G64960 67.2 1.4e-167 586.3
Chy12g01147 . 142 404 Core Cell Cycle Gene Families AT5G64960 53.2 1.8e-82 303.5
Chy06g01157 . 220 482 Core Cell Cycle Gene Families AT5G64960 54.3 2.0e-81 300.1
Chy02g01127 CCT,ECH 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 1.3e-80 297.4
Chy11g01134 CCT,ECH 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 6.3e-80 295.0
Chy06g00655 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.4 1.1e-79 294.3
Chy09g00032 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.9 1.4e-79 293.9
Chy10g00271 . 201 463 Core Cell Cycle Gene Families AT5G64960 51.8 4.5e-78 288.9
Chy11g01133 . 196 358 Core Cell Cycle Gene Families AT5G64960 61.0 6.8e-58 221.9
Chy02g02329 . 4 416 Core Cell Cycle Gene Families AT1G73690 74.1 1.0e-174 609.8
Chy02g02329 . 12 344 Core Cell Cycle Gene Families AT1G66750 76.9 8.5e-154 540.0
Chy02g02329 . 8 417 Core Cell Cycle Gene Families AT1G18040 74.9 4.9e-174 607.4
Chy08g00018 . 30 482 Core Cell Cycle Gene Families AT5G63610 78.0 5.6e-201 697.2
Chy05g01377 . 1 480 Core Cell Cycle Gene Families AT4G28980 63.2 1.7e-173 605.9
Chy03g00762 . 5 503 Core Cell Cycle Gene Families AT1G44110 60.1 1.1e-148 523.5
Chy01g02038 . 225 487 Core Cell Cycle Gene Families AT1G44110 56.3 5.9e-86 315.1
Chy04g00342 . 206 490 Core Cell Cycle Gene Families AT1G44110 51.9 2.6e-81 299.7
Chy07g00171 . 94 373 Core Cell Cycle Gene Families AT1G44110 51.1 1.3e-80 297.4
Chy03g01569 . 90 374 Core Cell Cycle Gene Families AT1G44110 50.9 2.4e-79 293.1
Chy03g01169 . 176 437 Core Cell Cycle Gene Families AT1G44110 53.8 1.6e-75 280.4
Chy01g02038 . 224 487 Core Cell Cycle Gene Families AT1G77390 51.9 9.1e-76 281.2
Chy07g00171 . 99 371 Core Cell Cycle Gene Families AT1G77390 50.5 7.2e-73 271.6
Chy03g01169 . 176 432 Core Cell Cycle Gene Families AT1G77390 51.0 2.4e-68 256.5
Chy04g00342 . 16 502 Core Cell Cycle Gene Families AT5G25380 51.9 1.7e-114 409.8
Chy03g01169 . 9 449 Core Cell Cycle Gene Families AT5G25380 50.7 4.5e-99 358.6
Chy03g00762 . 216 493 Core Cell Cycle Gene Families AT5G25380 54.0 3.9e-79 292.4
Chy07g00171 . 98 366 Core Cell Cycle Gene Families AT5G25380 50.6 8.5e-74 274.6
Chy01g00109 . 120 343 Core Cell Cycle Gene Families AT5G25380 51.6 7.7e-59 224.9
Chy03g01169 . 169 390 Core Cell Cycle Gene Families AT5G11300 69.4 2.8e-79 292.7
Chy03g00762 . 207 440 Core Cell Cycle Gene Families AT5G11300 53.5 1.4e-67 253.8
Chy03g01569 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 5.9e-61 231.9
Chy07g00171 . 94 310 Core Cell Cycle Gene Families AT5G11300 54.4 5.9e-61 231.9
Chy01g02038 . 157 487 Core Cell Cycle Gene Families AT1G15570 60.2 5.2e-111 398.3
Chy03g01169 . 172 449 Core Cell Cycle Gene Families AT1G15570 57.9 4.4e-86 315.5
Chy03g00762 . 217 500 Core Cell Cycle Gene Families AT1G15570 53.9 1.2e-78 290.8
Chy01g02038 . 4 487 Core Cell Cycle Gene Families AT1G80370 50.8 6.1e-115 411.4
Chy03g00762 . 217 488 Core Cell Cycle Gene Families AT1G80370 56.6 1.8e-79 293.5
Chy07g00171 . 94 371 Core Cell Cycle Gene Families AT1G80370 50.4 4.2e-76 282.3
Chy03g01569 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.3 3.0e-114 408.7
Chy07g00171 . 1 377 Core Cell Cycle Gene Families AT5G43080 56.3 5.6e-113 404.4
Chy04g00342 . 208 502 Core Cell Cycle Gene Families AT5G43080 50.7 4.5e-78 288.5
Chy03g00762 . 218 503 Core Cell Cycle Gene Families AT5G43080 50.7 6.5e-77 284.6
Chy03g01569 . 1 372 Core Cell Cycle Gene Families AT1G47210 58.9 3.7e-123 438.3
Chy07g00171 . 1 377 Core Cell Cycle Gene Families AT1G47210 55.1 7.1e-114 407.5
Chy01g00109 . 60 351 Core Cell Cycle Gene Families AT1G47210 50.3 5.6e-79 291.6
Chy04g00342 . 208 492 Core Cell Cycle Gene Families AT1G47210 50.2 3.2e-74 275.8
Chy01g02038 . 226 497 Core Cell Cycle Gene Families AT1G47210 50.7 9.3e-74 274.2
Chy07g00171 . 94 374 Core Cell Cycle Gene Families AT1G47220 59.4 4.2e-94 341.7
Chy03g01569 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.3 1.3e-92 336.7
Chy07g00171 . 1 376 Core Cell Cycle Gene Families AT1G47230 58.1 9.8e-116 413.7
Chy03g01569 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 4.9e-115 411.4
Chy01g00109 . 66 351 Core Cell Cycle Gene Families AT1G47230 52.8 3.6e-78 288.9
Chy03g00762 . 219 505 Core Cell Cycle Gene Families AT1G47230 50.7 1.9e-74 276.6
Chy01g02038 . 228 497 Core Cell Cycle Gene Families AT1G47230 50.5 1.6e-70 263.5
Chy08g00239 . 7 331 Core Cell Cycle Gene Families AT4G37490 55.3 2.0e-80 296.6
Chy08g00239 . 4 343 Core Cell Cycle Gene Families AT5G06150 53.8 1.9e-78 289.7
Chy02g00511 . 171 338 Core Cell Cycle Gene Families AT5G06150 54.2 1.8e-44 176.8
Chy05g00192 . 25 365 Core Cell Cycle Gene Families AT3G11520 51.4 3.3e-82 302.4
Chy08g00239 . 20 334 Core Cell Cycle Gene Families AT3G11520 56.8 5.3e-80 295.0
Chy02g00511 . 172 398 Core Cell Cycle Gene Families AT3G11520 50.7 1.6e-60 230.3
Chy05g00192 . 14 413 Core Cell Cycle Gene Families AT2G26760 50.5 4.5e-103 371.7
Chy02g00511 . 8 441 Core Cell Cycle Gene Families AT2G17620 60.5 2.1e-130 462.6
Chy07g00389 . 70 471 Core Cell Cycle Gene Families AT2G17620 51.6 1.5e-104 376.7
Chy08g00239 . 169 338 Core Cell Cycle Gene Families AT2G17620 52.3 9.2e-41 164.9
Chy02g00511 . 5 398 Core Cell Cycle Gene Families AT4G35620 58.2 3.0e-104 375.6
Chy07g00389 . 70 426 Core Cell Cycle Gene Families AT4G35620 51.5 9.8e-87 317.4
Chy05g00192 . 139 365 Core Cell Cycle Gene Families AT4G35620 50.9 8.4e-54 208.0
Chy08g00239 . 169 334 Core Cell Cycle Gene Families AT4G35620 52.1 8.2e-41 164.9
Chy07g00389 . 34 469 Core Cell Cycle Gene Families AT1G20610 64.2 3.1e-145 511.9
Chy02g00511 . 1 441 Core Cell Cycle Gene Families AT1G20610 56.1 1.1e-121 433.7
Chy08g00239 . 166 334 Core Cell Cycle Gene Families AT1G20610 51.8 1.2e-43 174.5
Chy07g00389 . 34 366 Core Cell Cycle Gene Families AT1G76310 63.5 9.3e-105 377.1
Chy02g00511 . 1 337 Core Cell Cycle Gene Families AT1G76310 53.6 6.5e-82 301.2
Chy05g00192 . 135 302 Core Cell Cycle Gene Families AT1G76310 52.4 5.6e-41 165.2
Chy01g00850 . 134 583 Core Cell Cycle Gene Families AT1G16330 52.8 1.5e-116 417.2
Chy09g00691 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.2 4.3e-110 394.8
Chy10g00930 . 1 295 Core Cell Cycle Gene Families AT1G70210 63.6 4.5e-99 358.2
Chy07g01733 . 1 186 Core Cell Cycle Gene Families AT1G70210 53.2 1.2e-48 190.7
Chy03g01563 . 51 328 Core Cell Cycle Gene Families AT4G34160 50.7 1.5e-66 250.4
Chy07g00160 . 331 556 Core Cell Cycle Gene Families AT4G34160 51.3 8.6e-59 224.6
Chy01g00082 . 52 282 Core Cell Cycle Gene Families AT4G34160 50.6 3.3e-58 222.6
Chy02g00746 . 49 254 Core Cell Cycle Gene Families AT5G65420 62.3 8.6e-69 257.3
Chy03g01325 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.4 5.1e-61 231.5
Chy02g00746 . 54 230 Core Cell Cycle Gene Families AT5G10440 59.3 3.4e-55 211.8
Chy03g01325 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.3 3.3e-50 195.3
Chy02g00941 . 1 205 Core Cell Cycle Gene Families AT5G27620 69.3 5.9e-79 291.2
Chy12g00760 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 5.8e-43 169.9
Chy11g00854 CCT 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 1.7e-42 168.3
Chy11g00854 CCT 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.7e-39 157.1
Chy12g00760 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 84.3 1.1e-38 155.6
Chy10g01383 . 32 1025 Core Cell Cycle Gene Families AT3G12280 73.1 0.0e+00 1402.5
Chy01g01665 . 2 484 Core Cell Cycle Gene Families AT1G02970 59.0 5.0e-155 544.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005328 2 4 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 0 1 1 1 1 0 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71448 PF00069 Pkinase 5.20E-70 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00032 Chy_Chr09 FPKM 0.124521 0.229995 3.975662 4.052244 35.778248 34.41383 36.254406 0.543372 0.421399 0.379497