Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00046 ATGGGAGAGACCAGCTCAAGGAGGAGTCATGGCGCAGCCACGTCGAGCTACCGTGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGTGAACCAGGAAAGAAGACGAGGATATGGTTGGGGAGCTTTGAGACCCCGGAGATGGCAGCGACGGCCTATGATGTAGCCGCTTATCACTTTCGTGGTCGTGATGCTCGCCTCAACTTCCCACATCTTGTCAACTCTCTCCCTTTCCCTCTGAGCTCCACTCCTGATGACATTCGTCTGGCTGCCCATGAGGCAGCTTTACGGGTACGAACAACGCCTGTTGTTGCATCGTCTGATGATCAGCTGGGTGACGAAACTTCCACCTTGGGGCTTGCGCCAGTCACTGTCCGATTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCGACCTTGGATTCGCCTAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGATCAAGAGTTTTCAAATGGTAATGTGTTTGTTGATCATGACATGCAGGATGATGATCAGATGATTAAGCAAGGTGGATTTACTCAAAGATAG 570 51.05 MGETSSRRSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPVVASSDDQLGDETSTLGLAPVTVRLSPSQIQAINESTLDSPKMWMQMSSESLLMDQEFSNGNVFVDHDMQDDDQMIKQGGFTQR* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 411782 412552 + Chy9G157620.1 Chy09g00046 232943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00046 189 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Chy09g00046 189 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Chy09g00046 189 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Chy09g00046 189 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Chy09g00046 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 158 - -
Chy09g00046 189 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Chy09g00046 189 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Chy09g00046 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 6 158 - -
Chy09g00046 189 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Chy09g00046 189 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01550 Chy-Chr7:19739769 Chy09g00046 Chy-Chr9:411782 3.68E-30 dispersed
Chy09g00046 Chy-Chr9:411782 Chy05g01389 Chy-Chr5:17949100 6.70E-31 dispersed
Chy09g01188 Chy-Chr9:14099979 Chy09g00046 Chy-Chr9:411782 1.94E-11 dispersed
Chy09g00046 Chy-Chr9:411782 Chy09g00049 Chy-Chr9:446130 2.74E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18447 PF00847 AP2 6.50E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00046 - - csv:101207243 356.295