Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00049 ATGGACCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTTTCCGAAATCCGTGAACCGGGCAAAAAGACTCGAATTTGGCTCGGTAGCTACCATCTTCCCGAAATGGCTGCTGCCGCTTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCCCGTCTCAACTTCCCTGACCTCGCTGACTCATTCCCCCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCTTCGCTAACACCAAGCCACCCGAACCGGCGCCTGCCCCGGTTCGGGTGGGGCTGTCGGCTAGTCAGATTCAGGCGATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTAGAGGTTAAGATTATTAGTATACCTTAA 432 57.87 MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPDLADSFPRPASSSPDHIQAAAHMAALRFANTKPPEPAPAPVRVGLSASQIQAINESPLDSPTMWMQMAAEALSLEVKIISIP* 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 446130 446906 + Chy9G157650.1 Chy09g00049 232946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00049 143 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Chy09g00049 143 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Chy09g00049 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 131 - -
Chy09g00049 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 131 - -
Chy09g00049 143 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Chy09g00049 143 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Chy09g00049 143 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Chy09g00049 143 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Chy09g00049 143 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Chy09g00049 143 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00049 Chy-Chr9:446130 Chy05g01389 Chy-Chr5:17949100 3.87E-35 dispersed
Chy09g00106 Chy-Chr9:907202 Chy09g00049 Chy-Chr9:446130 9.34E-30 dispersed
Chy09g00046 Chy-Chr9:411782 Chy09g00049 Chy-Chr9:446130 2.74E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18448 PF00847 AP2 2.70E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00049 - - csv:101207003 278.1