Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00102 ATGGCGATCTCCACCTCTAGACTTGGAAGAAGGCGTTGGATTGGGCAAAGAACATGGCGCAATCGATTCTCTTTCAGATTCTCTTCCCGCCGTCTCTTTCGTCTAACTATCCTTTGCCTCGCTATCATCGCAATTCTCCCTCCCATTTACTTCCATTTCAAGCTCAAGCGTTTTCAGCAGATTCAACAAAGGAACTGCAAATGGCTGACTCATCCTCCTCTTGTCTGTGCTCATGGCGGTGACTCGTCCAAGGCCTTCCCCAACACTATGGATGCTTATACAATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCAGATGGAATTTTATTTGCACTTCATGACAGGGACTTGCAGAGGATAACTGGGTCCAATACTTCTAAAGTTGGAAATTATAGCATGAAAGAGATAAAAAATATTGGTGCTGTTTATCAACACACTCATAAATTGCTGGATTTCAACATTCCTACCATTGAAGAAGCTTTGGTGTCAATATCAAAATCAGTTCAGCAGGTCATTCTAGACGCAAAGGTTGGACCACCGTCATATGAAAATGGGCTTGCAAAAGATATCATTTCTGTTGTTGAAAAGACACAATGTAAGAATTGTCTCGTTTGGGCTAAGAGCGATAGCTTAGCAAGGGACATAATCAGATCATCATCGGATATTAAGTTGCAGGTGGGGTATATCGTAATGAAGGATCCATCCACAGGGGAAAGAACCAACTTGCTGAGAATGAAAGGAGCCAAGGTGGTTGGTGTCTATCATCCATTGATTGATGGTGATCTTATGCGAATACTGCACAGGAGAGATAGAAAGGTGTATGCATGGACAGTTGATGATATTGAATCGATGAAAAGAATGTTAGTCGAGGGAGTAGATGCTTTTGTTACAAGCAACCCGACATTACTTGGAAGTGTGAAATTTTTTGTTTTGGCTTCTGGGTTTTTACCAAAACTTCAAATTACTTCCGGGTTTGTAAGATCTAGTACATTAGTGGGGGTTTTTGTCAAAATGGCTTATGATCATTTGGATCCATCGAAAAGCTATTCAGTTGCTTCAGGGCCAGGTTCTGCTTCAAAGCCTGCACCTGAATTGAAGGTTTATCAGTTTTTTGTGTTCTGTATTCCCATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTATCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTAATAACAATAACATCTCTACATCCGAAGTTGGGGTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACGTTCTTTGTCACTGATACACTATGTTCAGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAAATACCAACTTGTGGACATGTATTCCACATGGACTGCATTGATCATTGGCTAGCCAACCACAACACATGCCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGAATCGTCGAATGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAA 1626 41.88 MAISTSRLGRRRWIGQRTWRNRFSFRFSSRRLFRLTILCLAIIAILPPIYFHFKLKRFQQIQQRNCKWLTHPPLVCAHGGDSSKAFPNTMDAYTIALRSQANCIEVDVSRSSDGILFALHDRDLQRITGSNTSKVGNYSMKEIKNIGAVYQHTHKLLDFNIPTIEEALVSISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRSSSDIKLQVGYIVMKDPSTGERTNLLRMKGAKVVGVYHPLIDGDLMRILHRRDRKVYAWTVDDIESMKRMLVEGVDAFVTSNPTLLGSVKFFVLASGFLPKLQITSGFVRSSTLVGVFVKMAYDHLDPSKSYSVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGVKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHESSNEPQCEEPPPPHSNQACQHTTPPV* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 852028 859815 + Chy9G158180.1 Chy09g00102 232999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00102 541 Gene3D Phosphatidylinositol (PI) phosphodiesterase 64 314 IPR017946 GO:0006629|GO:0008081
Chy09g00102 541 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD4 10 311 IPR044236 -
Chy09g00102 541 SUPERFAMILY PLC-like phosphodiesterases 73 310 IPR017946 GO:0006629|GO:0008081
Chy09g00102 541 ProSiteProfiles Zinc finger RING-type profile. 453 495 IPR001841 -
Chy09g00102 541 SUPERFAMILY RING/U-box 437 505 - -
Chy09g00102 541 CDD GDPD 75 306 - -
Chy09g00102 541 Pfam Glycerophosphoryl diester phosphodiesterase family 83 307 IPR030395 GO:0006629|GO:0008081
Chy09g00102 541 Pfam Ring finger domain 453 495 IPR001841 -
Chy09g00102 541 MobiDBLite consensus disorder prediction 505 541 - -
Chy09g00102 541 ProSiteProfiles GP-PDE domain profile. 73 314 IPR030395 GO:0006629|GO:0008081
Chy09g00102 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 500 IPR013083 -
Chy09g00102 541 SMART ring_2 453 494 IPR001841 -
Chy09g00102 541 CDD RING-H2_PA-TM-RING 453 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00102 Chy-Chr9:852028 Chy05g01130 Chy-Chr5:15780704 6.99E-17 dispersed
Chy09g01247 Chy-Chr9:14525100 Chy09g00102 Chy-Chr9:852028 2.40E-13 dispersed
Chy09g00102 Chy-Chr9:852028 Chy02g02175 Chy-Chr2:25966095 1.79E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00102 - - csv:101219565 572.778