Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy09g00103 | ATGAGCACAAGCAGGATGATGAAGCTTACGCGCTTGTTCTCACGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGCTGGTAATGTTGGACATCCTTTGGGATCACACCCTTTCTCATCTAATGCTGGGATTTCAGATTCTACACAGAATTTTACTCGTACAGTGACAAAGAATGCAGGTGGTCGAGTTTTTGTTTCCTATCAAGTGTATAAGGGCAAAGCTGCACTCTCCATGGAACCTTGTATGCCAACTTTCACTAAAGAGGAGTCTGGGAATTTTATAATGAATCGACGTGGTACAATAATGCTGACATTCGTTCCTGCCATAGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCATTGTCCGCAACAGAGATTGGTTCTTTAATCAGTTTGGGTCCCAGAGATTCATGTGAATTCTTCCATGACCCCGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAGCTATTAAGGCCCATACAGATGGCAATGGCTATTTCTTCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTATTTGAGTGTTCCCTTCACAACAGGCGAATTTTTTGTGATGAAGACTGCTTGCAGTCACTCTGGTGAACACAATTACCACAACAAACTACATGTTTCTGTTCTAAAAACTGGGAGGTTGGTGTCGATAATTCGCGATCGAACGGTCAAACGTGGGCTTGGAGTTACATACAAGCCATTACAAACCCATCAGCCTCCCAAACAAACAAGCCATTACGTCCTGATTTGTGCCTTGGAATCGTTCTCTCTCGATGAATTATCCAATGTTGCATTCCTTTTTAATTGCTGCAGCAATGAATGA | 864 | 42.01 | MSTSRMMKLTRLFSRNQLFEQIVCKKAGNVGHPLGSHPFSSNAGISDSTQNFTRTVTKNAGGRVFVSYQVYKGKAALSMEPCMPTFTKEESGNFIMNRRGTIMLTFVPAIGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFFVMKTACSHSGEHNYHNKLHVSVLKTGRLVSIIRDRTVKRGLGVTYKPLQTHQPPKQTSHYVLICALESFSLDELSNVAFLFNCCSNE* | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 859855 | 874109 | - | Chy9G158190.1 | Chy09g00103 | 233000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy09g00103 | 287 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 56 | 215 | IPR009044 | GO:0003677|GO:0006355 | |
Chy09g00103 | 287 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 62 | 208 | IPR009044 | GO:0003677|GO:0006355 | |
Chy09g00103 | 287 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 6 | 208 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Chy09g00103 | 287 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 6 | 208 | - | - | |
Chy09g00103 | 287 | Pfam | Whirly transcription factor | 70 | 204 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g00969 | Chy-Chr3:13217997 | Chy09g00103 | Chy-Chr9:859855 | 2.75E-48 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18449 | PF08536 | Whirly | 9.60E-55 | CL0609 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy09g00103 | - | - | csv:101219085 | 390.193 |