Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00103 ATGAGCACAAGCAGGATGATGAAGCTTACGCGCTTGTTCTCACGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGCTGGTAATGTTGGACATCCTTTGGGATCACACCCTTTCTCATCTAATGCTGGGATTTCAGATTCTACACAGAATTTTACTCGTACAGTGACAAAGAATGCAGGTGGTCGAGTTTTTGTTTCCTATCAAGTGTATAAGGGCAAAGCTGCACTCTCCATGGAACCTTGTATGCCAACTTTCACTAAAGAGGAGTCTGGGAATTTTATAATGAATCGACGTGGTACAATAATGCTGACATTCGTTCCTGCCATAGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCATTGTCCGCAACAGAGATTGGTTCTTTAATCAGTTTGGGTCCCAGAGATTCATGTGAATTCTTCCATGACCCCGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAGCTATTAAGGCCCATACAGATGGCAATGGCTATTTCTTCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTATTTGAGTGTTCCCTTCACAACAGGCGAATTTTTTGTGATGAAGACTGCTTGCAGTCACTCTGGTGAACACAATTACCACAACAAACTACATGTTTCTGTTCTAAAAACTGGGAGGTTGGTGTCGATAATTCGCGATCGAACGGTCAAACGTGGGCTTGGAGTTACATACAAGCCATTACAAACCCATCAGCCTCCCAAACAAACAAGCCATTACGTCCTGATTTGTGCCTTGGAATCGTTCTCTCTCGATGAATTATCCAATGTTGCATTCCTTTTTAATTGCTGCAGCAATGAATGA 864 42.01 MSTSRMMKLTRLFSRNQLFEQIVCKKAGNVGHPLGSHPFSSNAGISDSTQNFTRTVTKNAGGRVFVSYQVYKGKAALSMEPCMPTFTKEESGNFIMNRRGTIMLTFVPAIGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFFVMKTACSHSGEHNYHNKLHVSVLKTGRLVSIIRDRTVKRGLGVTYKPLQTHQPPKQTSHYVLICALESFSLDELSNVAFLFNCCSNE* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 859855 874109 - Chy9G158190.1 Chy09g00103 233000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00103 287 Gene3D Transcriptional Coactivator Pc4; Chain A 56 215 IPR009044 GO:0003677|GO:0006355
Chy09g00103 287 SUPERFAMILY ssDNA-binding transcriptional regulator domain 62 208 IPR009044 GO:0003677|GO:0006355
Chy09g00103 287 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 208 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy09g00103 287 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 208 - -
Chy09g00103 287 Pfam Whirly transcription factor 70 204 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00969 Chy-Chr3:13217997 Chy09g00103 Chy-Chr9:859855 2.75E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18449 PF08536 Whirly 9.60E-55 CL0609 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00103 - - csv:101219085 390.193