Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00103 ATGAGCACAAGCAGGATGATGAAGCTTACGCGCTTGTTCTCACGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGCTGGTAATGTTGGACATCCTTTGGGATCACACCCTTTCTCATCTAATGCTGGGATTTCAGATTCTACACAGAATTTTACTCGTACAGTGACAAAGAATGCAGGTGGTCGAGTTTTTGTTTCCTATCAAGTGTATAAGGGCAAAGCTGCACTCTCCATGGAACCTTGTATGCCAACTTTCACTAAAGAGGAGTCTGGGAATTTTATAATGAATCGACGTGGTACAATAATGCTGACATTCGTTCCTGCCATAGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCATTGTCCGCAACAGAGATTGGTTCTTTAATCAGTTTGGGTCCCAGAGATTCATGTGAATTCTTCCATGACCCCGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAGCTATTAAGGCCCATACAGATGGCAATGGCTATTTCTTCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTATTTGAGTGTTCCCTTCACAACAGGCGAATTTTTTGTGATGAAGACTGCTTGCAGTCACTCTGGTGAACACAATTACCACAACAAACTACATGTTTCTGTTCTAAAAACTGGGAGGTTGGTGTCGATAATTCGCGATCGAACGGTCAAACGTGGGCTTGGAGTTACATACAAGCCATTACAAACCCATCAGCCTCCCAAACAAACAAGCCATTACGTCCTGATTTGTGCCTTGGAATCGTTCTCTCTCGATGAATTATCCAATGTTGCATTCCTTTTTAATTGCTGCAGCAATGAATGA 864 42.01 MSTSRMMKLTRLFSRNQLFEQIVCKKAGNVGHPLGSHPFSSNAGISDSTQNFTRTVTKNAGGRVFVSYQVYKGKAALSMEPCMPTFTKEESGNFIMNRRGTIMLTFVPAIGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFFVMKTACSHSGEHNYHNKLHVSVLKTGRLVSIIRDRTVKRGLGVTYKPLQTHQPPKQTSHYVLICALESFSLDELSNVAFLFNCCSNE* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 859855 874109 - Chy9G158190.1 Chy09g00103 233000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00103 287 Gene3D Transcriptional Coactivator Pc4; Chain A 56 215 IPR009044 GO:0003677|GO:0006355
Chy09g00103 287 SUPERFAMILY ssDNA-binding transcriptional regulator domain 62 208 IPR009044 GO:0003677|GO:0006355
Chy09g00103 287 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 208 IPR013742 GO:0003697|GO:0006355|GO:0006952
Chy09g00103 287 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 208 - -
Chy09g00103 287 Pfam Whirly transcription factor 70 204 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00103 - - - csv:101219085 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00969 Chy-Chr3:13217997 Chy09g00103 Chy-Chr9:859855 2.75E-48 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g00969 . 46 274 Whirly Transcription Factor Family AT1G14410 68.1 6.6e-90 327.4
Chy09g00103 . 62 212 Whirly Transcription Factor Family AT1G71260 62.9 1.2e-50 196.8
Chy03g00969 . 49 274 Whirly Transcription Factor Family AT2G02740 67.4 1.8e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18449 PF08536 Whirly 9.60E-55 CL0609 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00103 Chy_Chr09 FPKM 8.040159 8.032376 9.516557 8.301192 15.265489 14.70911 12.306542 9.406939 8.309679 11.557702