Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00171 ATGTCATTAAACAGAGGATCCAGTAAAGCTTTCAACAAGACCTTGAAAATGCAGCCTGGTGAAGTCACAAGTCTCCAATATCTCATCCCCTCCAATTTATCTCCGTACGCTACTCACTTTCCCATGGCACAGAACAACTTACCTACAATGCAACTTAATGAATTCTCTGATCCTTTATATAATTTCCAAGGTCCTTCTCAAGTTCATGATTTTAGACAGCCATGTTTGAGTAGCAATTCAACTTCTGATGAAGCAGATGAGCAACAGCAAAGCCTTATCAATGAGAGGAAGCAGAGAAGGATGATATCAAATAGAGAGTCTGCACGACGGTCACGTATGCGAAAACAGAAACATTTGGATGAGCTATGGTCTCAAGTGCTTTGGCTAAGGAATGAGAACCATCAGCTTATTGATAAGCTGAATCAAGTCTCAGACTGTCATGACAAGGTTGTTCAAGAAAATGTTCAACTCAAAGAGCAGACTTCAGAACTTCGTCGAATGCTTACAGAACTACAGGTCAATGATCATTACCCCAACTTCAGAGAACTTGAAAAAATCCCCCCTAACTCACCATCCGAGAGCTGA 585 41.03 MSLNRGSSKAFNKTLKMQPGEVTSLQYLIPSNLSPYATHFPMAQNNLPTMQLNEFSDPLYNFQGPSQVHDFRQPCLSSNSTSDEADEQQQSLINERKQRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIDKLNQVSDCHDKVVQENVQLKEQTSELRRMLTELQVNDHYPNFRELEKIPPNSPSES* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1447735 1456747 - Chy9G158870.1 Chy09g00171 233068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00171 194 Pfam bZIP transcription factor 96 150 IPR004827 GO:0003700|GO:0006355
Chy09g00171 194 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 99 114 IPR004827 GO:0003700|GO:0006355
Chy09g00171 194 MobiDBLite consensus disorder prediction 70 91 - -
Chy09g00171 194 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 94 157 IPR004827 GO:0003700|GO:0006355
Chy09g00171 194 SMART brlzneu 92 156 IPR004827 GO:0003700|GO:0006355
Chy09g00171 194 Coils Coil 154 174 - -
Chy09g00171 194 CDD bZIP_plant_GBF1 97 148 IPR045314 GO:0003700|GO:0006355
Chy09g00171 194 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 17 179 IPR044521 -
Chy09g00171 194 SUPERFAMILY Leucine zipper domain 96 145 IPR046347 GO:0003700|GO:0006355
Chy09g00171 194 PANTHER BZIP TRANSCRIPTION FACTOR 17 179 - -
Chy09g00171 194 MobiDBLite consensus disorder prediction 70 88 - -
Chy09g00171 194 Gene3D - 94 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00171 - - - csv:101208954 359.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00171 Chy10g01085 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00171 Chy-Chr9:1447735 Chy09g00417 Chy-Chr9:3662645 1.50E-36 dispersed
Chy05g01192 Chy-Chr5:16400995 Chy09g00171 Chy-Chr9:1447735 1.34E-13 transposed
Chy10g01085 Chy-Chr10:15951534 Chy09g00171 Chy-Chr9:1447735 2.02E-54 wgd
Chy12g01470 Chy-Chr12:18650410 Chy09g00171 Chy-Chr9:1447735 1.56E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001521 7 2 3 4 4 2 3 2 2 1 2 2 4 2 2 2 2 0 3 2 2 2 2 2 2 2 2 3 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18452 PF00170 bZIP_1 2.60E-13 CL0018 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00171 Chy_Chr09 FPKM 15.450644 18.358889 11.882648 14.308807 12.201409 10.385425 11.259586 9.095597 8.075037 9.565152