Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00182 ATGGGTGCTGTCTGCTGTTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTCTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAAAGCTTATTAAATGCTTACACATTGATTTTTCGAAGAGGAGAAGTACATTCTGTCTCCTCATCAATTCAAGGGGCAACATCTATTAATTCGACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGAAGTTGATACAGATTCAGATTCTTTGGGCTCAGGAGGCAAATGGAACGGGTCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAATCGTCTCTAAAGTTCCCTTCAACTAAATCTACCTCTGGACTTGGATATGCATATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCGGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGATCCTAAAATCCCCTAAGGAGTTAAATATGGTCAAATTCTGCCAATACAGCATTTGTTTTCTGAGTCTGAGTTCTGATTCTACTGATGAGCTTGATTCACAATATTTGATTATGCAATGGCATTCGATGAAACGACTTGATGTGCGTGTCGCGGACGAAGCCAGCAGCAGCACCTTGGGCATAACCATCAACAGAAACAGGAAAGGCTATACTTTACTGCCAAACCTTCCGATCAAGCTTCGCCAAATAGCAGTGAACGTAAATTTATCACAAGGGGGGGTCCCAAATTCCTATTTCCGGATTCCTTCGAAGTCAAATTCTATAAGCAAACACAGATCTAAAAACCCATAA 1008 41.57 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSLLNAYTLIFRRGEVHSVSSSIQGATSINSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSGGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKILKSPKELNMVKFCQYSICFLSLSSDSTDELDSQYLIMQWHSMKRLDVRVADEASSSTLGITINRNRKGYTLLPNLPIKLRQIAVNVNLSQGGVPNSYFRIPSKSNSISKHRSKNP* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1558046 1566477 + Chy9G158980.1 Chy09g00182 233079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00182 335 MobiDBLite consensus disorder prediction 58 89 - -
Chy09g00182 335 SUPERFAMILY RING/U-box 172 224 - -
Chy09g00182 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 221 - -
Chy09g00182 335 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 221 - -
Chy09g00182 335 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Chy09g00182 335 MobiDBLite consensus disorder prediction 104 123 - -
Chy09g00182 335 MobiDBLite consensus disorder prediction 58 76 - -
Chy09g00182 335 SMART ring_2 177 217 IPR001841 -
Chy09g00182 335 MobiDBLite consensus disorder prediction 104 133 - -
Chy09g00182 335 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Chy09g00182 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 232 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00182 Chy-Chr9:1558046 Chy11g02011 Chy-Chr11:25965490 2.58E-07 dispersed
Chy09g00182 Chy-Chr9:1558046 Chy09g01243 Chy-Chr9:14482230 5.55E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00182 - - csv:101207736 452.21