Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00188 | ATGAATGCGAATGGTTCACGATTTCAATCGTTTGGTCAAACTGAGATCAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCGTAGGAGCTGGCCTCTTTACTGGGATTACTGTTGCACTGTACCCTGTTTCTGTTGTGAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAGAAATGCCCTGTCTGTTATTAAAGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTATAGAGGGTTTGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATCATCTTTCTTACTGCTTTAGAGACTACCAAAGTGGGAGCCTATAAACTGGTTGAGCCGTTTAAATTTTCTGAACCTACACAGGCTGCTTTGGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCTGGAAATACAAGATATACTGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCTAATGGGATTCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGCTATGGTGCAAGTCAACGCGTCATCTGGAGGTTCTTAGGTCAAAACTCTGCTTCAGAGAAATTTGCTCCTAGCCATTCCCAACTTATTTCAGTTCAAGCTGTGGGTGGAATAATTGCGGGTGCAACAGCTTCCTGCATTACAACACCATTGGACACTATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCTAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGGTGGAAAGGTTTTTATAGGGGGCTTGGTCCTCGGTTCTTCAGCATGTCTGCCTGGGGAACATCGATGATATTGGCCTACGAGTACTTGAAGCAGAATTTCATTCCATCTGAAAACCACATTCATTTTTAG | 975 | 43.08 | MNANGSRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAERNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAALANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYTGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFAPSHSQLISVQAVGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKQNFIPSENHIHF* | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1629821 | 1636307 | + | Chy9G159040.1 | Chy09g00188 | 233085 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00188 | 324 | Gene3D | Mitochondrial carrier domain | 27 | 321 | IPR023395 | - | |
| Chy09g00188 | 324 | SUPERFAMILY | Mitochondrial carrier | 19 | 311 | IPR023395 | - | |
| Chy09g00188 | 324 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 1 | 314 | - | - | |
| Chy09g00188 | 324 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 230 | 314 | IPR018108 | - | |
| Chy09g00188 | 324 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN | 1 | 314 | - | - | |
| Chy09g00188 | 324 | Pfam | Mitochondrial carrier protein | 235 | 316 | IPR018108 | - | |
| Chy09g00188 | 324 | Pfam | Mitochondrial carrier protein | 124 | 211 | IPR018108 | - | |
| Chy09g00188 | 324 | Pfam | Mitochondrial carrier protein | 28 | 106 | IPR018108 | - | |
| Chy09g00188 | 324 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 19 | 107 | IPR018108 | - | |
| Chy09g00188 | 324 | PRINTS | Mitochondrial carrier protein signature | 183 | 201 | IPR002067 | GO:0055085 | |
| Chy09g00188 | 324 | PRINTS | Mitochondrial carrier protein signature | 39 | 53 | IPR002067 | GO:0055085 | |
| Chy09g00188 | 324 | PRINTS | Mitochondrial carrier protein signature | 239 | 261 | IPR002067 | GO:0055085 | |
| Chy09g00188 | 324 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 122 | 210 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g02185 | Chy-Chr1:26400850 | Chy09g00188 | Chy-Chr9:1629821 | 2.19E-86 | dispersed | |
| Chy06g00780 | Chy-Chr6:5481718 | Chy09g00188 | Chy-Chr9:1629821 | 4.84E-106 | dispersed | |
| Chy08g00665 | Chy-Chr8:14538425 | Chy09g00188 | Chy-Chr9:1629821 | 2.28E-19 | dispersed | |
| Chy09g00188 | Chy-Chr9:1629821 | Chy11g01383 | Chy-Chr11:20123077 | 6.06E-33 | dispersed | |
| Chy09g00188 | Chy-Chr9:1629821 | Chy07g00267 | Chy-Chr7:2105148 | 2.24E-81 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00188 | K15121 | - | csv:101206140 | 613.994 |