Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00212 ATGCCTTCTTCCATGTGGAGCGAGCTTTGTCTGAGGCCATCACCGCCTCCTCTCAATGTCGCCGCCGACACAACCCCAGTCGTGGAATGCTACGCCTGTACCCAAGTGGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAACAACCCGAATGGGAAGCCTCCGCGGGCTCTTCCCTGGTTCCAATCCAACCCACGAAATCCTCACCAGCGCCCCGACATTCTTCCGCGGGTTGCTTCGGGACGGTTCTGGACCCAAGAAAGAAACCGGTTCAGAAATGGAACCGGGTTCTGTTATTGGCCCGGGGAATGTCTCTTGCGGTTGATCCGCTTTACTTCTACGCTCTGTCTATTGGCAGAGGAGGATGGCCTTGCCTGTACATGGATGGTGGATTGGCTGCCGGAGTTACGGTGGTTCGAACGTGTCTTGATATAGTGCACTTGTGGCACGTGTGGCTTCAGTTCAGGCTTGCTTACGTGTCGAAAGAGAGTATGGTGATTGGGTGTGGGAAACTGGTGTGGGATGCACGTGATATTGCTTCTCACTATGTTCGTTCTTTCAAAGGCTTTTGGTTTGATGCCTTTGTTATCCTCCCTGTTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTGATCAGAGAAGAGAGAATCAAACTTATAATGACAGTAATCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTTACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCCTCTCATGTTGCTGGGGGTTGTTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGTATCCAACAACATTGTGAGAGAAACAAGTGCAACTTATCTTTGTCTTGCTCTGAGGAGGTGTGTTATCGGTTTCTCTCATCAGATACAACGATTGGAAGTTCGTGTGGTCGGAATTCAACTGCTACGTTTAGGAAGCCACTATGTTTGGATGTTAATGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCTGTCATTTCCAGCAATTCAGTTGCTGTCAAAATCCTTTATCCTATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGAAATGATCTTGAGCCTACGAGTAATTGGCTGGAAGTGTGCTTCAGTATTTGTACGGTGCTTAGTGGATTGTTGCTTTTCACTCTTTTGATTGGTAATATTCAGGTACTTTTGCATGCTGTCATGGCAAGGCGGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGGCAATTGCCGTCTCGTTTGAAACAACGAGTTCGACACTATGAGCACGAGAGATGGGCAGCTATGGGGGGAGAAGATGAGATGGAACTAATCAATGATTTGCCTGAAGGTCTTAGAAGAGATATCAAACGTCATCTTTGTGTTGACCTAATCAGAAAGGTGCCTCTCTTTCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATAATCAGAGAAGGAGATCCTGTTCCAAGGATGCTATTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCGACAAGTTTTATTGAACCGGGAGGATTTCTTGGTGACGAACTGCTATCGTGGTGTCTTCGTCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCGGACCATCTGAAGTACATAACTGATCACTTCCGCTACAAATTCGCGAATGAGAGACTGAAGAGAACAGCAAGATTTTACTCTTCCAACTGGAGAACATGGGCTGCTGTTAACATACAACTTGCTTGGCGTCGATACAGAAAACGGATGAGGCGTCCAGTGATAGCTGTGGTGGAAAACGGAAGCACTGAACGTCGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGACCACATGATCATCTTGAATAG 2067 46.59 MPSSMWSELCLRPSPPPLNVAADTTPVVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKSSPAPRHSSAGCFGTVLDPRKKPVQKWNRVLLLARGMSLAVDPLYFYALSIGRGGWPCLYMDGGLAAGVTVVRTCLDIVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARDIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYRFLSSDTTIGSSCGRNSTATFRKPLCLDVNGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLKQRVRHYEHERWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRPVIAVVENGSTERRLLQYAAMFMSFRPHDHLE* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1790434 1794543 + Chy9G159280.1 Chy09g00212 233109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00212 688 CDD CAP_ED 501 608 IPR000595 -
Chy09g00212 688 Gene3D Jelly Rolls 499 617 IPR014710 -
Chy09g00212 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 34 688 - -
Chy09g00212 688 ProSiteProfiles cAMP/cGMP binding motif profile. 501 580 IPR000595 -
Chy09g00212 688 Pfam Cyclic nucleotide-binding domain 521 609 IPR000595 -
Chy09g00212 688 SUPERFAMILY cAMP-binding domain-like 428 615 IPR018490 -
Chy09g00212 688 SMART cnmp_10 501 626 IPR000595 -
Chy09g00212 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 34 688 - -
Chy09g00212 688 SUPERFAMILY Voltage-gated potassium channels 89 422 - -
Chy09g00212 688 Gene3D - 132 425 - -
Chy09g00212 688 Gene3D Helix hairpin bin 427 492 - -
Chy09g00212 688 Pfam Ion transport protein 97 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01730 Chy-Chr6:20155535 Chy09g00212 Chy-Chr9:1790434 0 dispersed
Chy09g00212 Chy-Chr9:1790434 Chy12g01580 Chy-Chr12:19306842 3.37E-84 dispersed
Chy09g00212 Chy-Chr9:1790434 Chy06g00103 Chy-Chr6:680407 2.05E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00212 K05391 - csv:101203560 1407.12