Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00217 ATGGCTAAGAAGGATGATTCTGCGACAAGACCTCCACTTCAACGCCCCACTATTACTCTCCCGCCTCGTCCTTCTATGGAGGCTTTTTTCACCGGCGGTTCCACTGGGGTTAGCCCTGGTCCTATGACTCTTCTTTCAAGTTACTTCGCCGACGGTGCCGTTGACTCTCCTTCCTTCTCCCAGCTTCTCGCTGGAGCTATGGCTTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCTACTCCCAATTATTACGCCAAGGATGGACCCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGGTGAATTTAGTGGTAGCTCGTTCTCCTTTGTTCTCGGTTCCTCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCGGGGTTTTATCCTCCTCAGAGTCCATTTGGAATGTCACATCAGCAGGCATTGGCTCAAGTTACTGCTCAAGCAGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATACCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTAGTGCGTGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATAATACCCTCCACATCAGACACAAAAAGTCTGATTGCAGAATCGACAGAAGTTTCTCATTCTGATAGAAAATATCAACCTCCTCCTCCCCCCCATGGCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGGCAGAAGTTGGTTAAGGGCAGTGAATTTCCACGAAGCTATTACAAATGCACTCATTTGAATTGTCCCGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATATTGAGCCAGCTGGATGTACAAATTCATTGATTAAGCCTGAATGTGGCTTGCAAAACCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGGACGAGCTGATACCGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGCGGCAGAACATTGACGCAGGGACATCTGGAGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTCCAAACGAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGGTCTTCAACGGACTCGAAAGCTGTTGTAACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCCAGAAACAGCAGCCACCACACTGTCAACAACACTGTCCACCATATCAAACCACTCAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAATGACCAGAGACCTGCCGTTTTGCAGCTTAAAGAAGAACAAATCACCGTGTAA 1521 45.89 MAKKDDSATRPPLQRPTITLPPRPSMEAFFTGGSTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGPASELEFGMKQSKPVNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLVRDPSFSLDEASQLAIIPSTSDTKSLIAESTEVSHSDRKYQPPPPPHGSDKPADDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNIEPAGCTNSLIKPECGLQNQAGILNKSSENVQLGSSDSEGRADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHHIKPLKVVAQKHPLLKEMEFGTNDQRPAVLQLKEEQITV* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1819693 1823754 + Chy9G159330.1 Chy09g00217 233114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00217 506 MobiDBLite consensus disorder prediction 198 237 - -
Chy09g00217 506 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 MobiDBLite consensus disorder prediction 283 305 - -
Chy09g00217 506 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 PANTHER WRKY PROTEIN 10 505 - -
Chy09g00217 506 MobiDBLite consensus disorder prediction 1 33 - -
Chy09g00217 506 MobiDBLite consensus disorder prediction 341 359 - -
Chy09g00217 506 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 SUPERFAMILY WRKY DNA-binding domain 230 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 MobiDBLite consensus disorder prediction 328 371 - -
Chy09g00217 506 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 Gene3D WRKY domain 226 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 Gene3D WRKY domain 377 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g00217 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 505 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02291 Chy-Chr4:27436313 Chy09g00217 Chy-Chr9:1819693 1.07E-81 dispersed
Chy06g00013 Chy-Chr6:100402 Chy09g00217 Chy-Chr9:1819693 2.11E-19 dispersed
Chy06g01876 Chy-Chr6:22629322 Chy09g00217 Chy-Chr9:1819693 1.23E-17 dispersed
Chy09g00217 Chy-Chr9:1819693 Chy02g01672 Chy-Chr2:16368321 2.37E-14 dispersed
Chy02g02124 Chy-Chr2:25534349 Chy09g00217 Chy-Chr9:1819693 2.44E-15 transposed
Chy11g01398 Chy-Chr11:20393355 Chy09g00217 Chy-Chr9:1819693 1.11E-74 transposed
Chy10g01039 Chy-Chr10:15648725 Chy09g00217 Chy-Chr9:1819693 1.01E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18454 PF03106 WRKY 3.20E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00217 - - csv:101223114 1015.37