Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00235 ATGATTCGAAAGAGAACAAATGACAATAGCTTCAACCGCTTTCAACAGTCTAATTTATGGCCGAAATGCACCAACTTTCGTTCTTTGAAGCAACTTCATGCCTTTCTGATCGTCAATGGCCTTAATTCAACCACTTCTGTAGTCAGAGATCTCATTTTTGTCAGTGCAATAGTTGTTTCTGGGACAATGGATTATGCCCACCAATTGTTCGCTCAAATTTCTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGACCTTGAAGCCTGCAACTGCCGTTTCTCTTTATACCCAGATGGAAAATCGTGGGCTTAGGCCTGATAAATTTACCTACTCCTTTGTGCTCAAAGCCTGCACTAAGCTTTCATGGGTTAAGTTGGGGTTTGGAATTCACGGGAAGGTTTTGAAGTCTGGATTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTCCATGCTAATTGTGGCGATTTAGCTACTGCAAGAGCACTGTTTGACGCTTCTGCCAAAAGGGAAGTTGTGCCTTGGTCAGCTTTGACAGCAGGCTATGCAAGAAGAGGGAAATTGGATGTTGCACGACAGTTGTTTGACGAAATGCCCATGAAAGACTTGGTCTCGTGGAATGTGATGATTACGGCATATGCGAAGCATGGGGAGATGGAGAAGGCTAGGAAACTGTTTGATGAAGTTCCGAAGAAAGATGTTGTGACTTGGAATGCGATGATTGCGGGATATGTGCTCTCTAGATTGAACAAGGAAGCTTTGGAGATGTTTGATGCAATGAGAGATTTGGGACAAAGGCCGGATGATGTAACAATGTTGAGTATCTTATCTGCTTCTGCTGATTTGGGAGATTTGGAAATTGGAAAGAAGATACATCGTTCCATTTTCGACATGTGTTGTGGAGATTTAAGTGTTCTTCTTAGCAATGCACTTATAGACATGTATGCCAAGTGTGGAAGCATTGGGAATGCTTTGGAAGTTTTTCAAGGGATGAGAAAAAAAGATACCTCCTCATGGAATTCAATAATAGGAGGTTTGGCTCTTCATGGACATGCTGAGGAGTCAATAAATCTATTTCAGGAGATGCTCAGGTTGAAAATGAAGCCAAATGAAATCACTTTTGTTGCCGTGTTGGTTGCTTGTAGCCATGCTGGGAAAGTACGAGAAGGGAGAATGTACTTCAATCTTATGAGAAACGTGTTCAAAATTGAGCCCAATATCAAGCATTACGGATGTATGGTAGACATATTGGGGCGTGCCGGCCTATTGATTGAAGCATTTGATTTTATAGACACGATGGAGATTGAACCTAATGCCATCATTTGGAGAACACTACTTGGGGCCTGTAGAGTTCATGGAGATGTAGAATTGGGAAGGCGTGCAAATGAGCAATTACTCAAAATGAGGAAAGATGAGAGTGGGGATTATGTACTCCTTTCTAACATATATGCATCACAAGGTGAGTGGGATGGAGTCCAGAAAGTGCGGAAGTTGATGGATGATGGTGGGGTGAAAAAGAAGGTAGGACGTAGCCTGATTGACTCAGATAACAGCTTCTTAATGCATTTCTTGTTTGACTCAAAGCCCAACTTTGTAGAAGACAGTTGA 1629 41.93 MIRKRTNDNSFNRFQQSNLWPKCTNFRSLKQLHAFLIVNGLNSTTSVVRDLIFVSAIVVSGTMDYAHQLFAQISEPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGLRPDKFTYSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMRNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGRSLIDSDNSFLMHFLFDSKPNFVEDS* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1942857 1944485 + Chy9G159510.1 Chy09g00235 233132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00235 542 Pfam PPR repeat family 341 388 IPR002885 -
Chy09g00235 542 Pfam PPR repeat family 239 285 IPR002885 -
Chy09g00235 542 Pfam PPR repeat family 76 124 IPR002885 -
Chy09g00235 542 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 191 - -
Chy09g00235 542 Gene3D Tetratricopeptide repeat domain 311 529 IPR011990 GO:0005515
Chy09g00235 542 Gene3D Tetratricopeptide repeat domain 18 126 IPR011990 GO:0005515
Chy09g00235 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Chy09g00235 542 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 191 221 - -
Chy09g00235 542 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 222 522 - -
Chy09g00235 542 PANTHER OS03G0168550 PROTEIN 191 221 - -
Chy09g00235 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Chy09g00235 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 316 342 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 211 241 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 80 112 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 242 275 IPR002885 -
Chy09g00235 542 TIGRFAM PPR: pentatricopeptide repeat domain 182 209 IPR002885 -
Chy09g00235 542 Gene3D Tetratricopeptide repeat domain 127 208 IPR011990 GO:0005515
Chy09g00235 542 PANTHER OS03G0168550 PROTEIN 222 522 - -
Chy09g00235 542 PANTHER OS03G0168550 PROTEIN 1 191 - -
Chy09g00235 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Chy09g00235 542 Gene3D Tetratricopeptide repeat domain 209 304 IPR011990 GO:0005515
Chy09g00235 542 Pfam PPR repeat 181 208 IPR002885 -
Chy09g00235 542 Pfam PPR repeat 417 441 IPR002885 -
Chy09g00235 542 Pfam E motif 459 520 IPR046848 -
Chy09g00235 542 SUPERFAMILY TPR-like 136 239 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00235 - - - csv:101211751 1069.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00235 Chy-Chr9:1942857 Chy12g01543 Chy-Chr12:19131760 4.22E-139 dispersed
Chy01g00893 Chy-Chr1:8181261 Chy09g00235 Chy-Chr9:1942857 7.79E-122 transposed
Chy02g00012 Chy-Chr2:101070 Chy09g00235 Chy-Chr9:1942857 1.10E-08 transposed
Chy02g01314 Chy-Chr2:9707723 Chy09g00235 Chy-Chr9:1942857 4.84E-131 transposed
Chy04g02310 Chy-Chr4:27550276 Chy09g00235 Chy-Chr9:1942857 2.68E-135 transposed
Chy06g02059 Chy-Chr6:24765553 Chy09g00235 Chy-Chr9:1942857 4.93E-26 transposed
Chy12g01527 Chy-Chr12:19025878 Chy09g00235 Chy-Chr9:1942857 2.19E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00235 .
Vvi14g1569 . Blo11g00578 . . . . Bma14g01456 . . . . . . . . . . Bhi06g00382 . . . Hepe02g2018 . Lcy10g2016 . . . . . . . . . . . Lsi02g01472 . . . . . . . . . . . . Cmo04g02903 . Cma04g02772 . Car04g02671 . . . . . . . . . . Cla09g01769 . . . . . . . . Chy09g00235 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013314 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00235 Chy_Chr09 FPKM 0.242938 0.0 1.229539 1.345398 0.761525 0.811925 0.610495 0.197027 0.085475 0.0