Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00238 ATGGCAATCATAACAACAGTCCTCCAATTGCTTCTTTTTTTCCCAATCTTCTCCTCTGTTAATGCAGATTATGGAGGTTGGATCAGCGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGCGGCGCTTGTGGGTATGGGAATTTGTATAGCCAAGGCTATGGGACGAACACTGCAGCGTTGAGCACGGCTCTTTTCGATAATGGACTCAGTTGTGGCGCTTGTTTTGAGCTACGCTGTGTCAATGACCCTCAGTGGTGTCTTCCTGGCACCATTGTTGTCACTGCCACTAATTTCTGTCCTCCTGGTGGCTGCTGTGACCCTCCTAATCATCATTTTGATCTCTCTCAGCCTATCTTTCAACACATTGCTCAATATCGCGCTGGGATTATCCCTGTCGCTTACCGCAGGGTAAGGTGTAGGAGAAGTGGAGGAATAAGATTCACAATCAACGGGCATTCATATTTCAACTTAGTACTAATCACAAACGTGGGGGGCGCCGGCGATATTCATTCGGTGGCAATTAAGGGTTCGAAAACAAGATGGCAACCGATGTCTAGAAATTGGGGCCAAAACTGGCAGTCCAATTCTTATCTGAACGGACAAAGCCTCTCATTTTTGGTCACCGCCAGCGACGGCCGGAAAGTCCTCTCCTACAACGTAGCTCCCTCCGGTTGGTCCTTCGGCCAAACTTATGTCGGCGGCCAATTTCGTTATTAA 732 48.22 MAIITTVLQLLLFFPIFSSVNADYGGWISAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDIHSVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRKVLSYNVAPSGWSFGQTYVGGQFRY* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1968941 1969946 + Chy9G159540.1 Chy09g00238 233135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00238 243 Gene3D - 15 145 IPR036908 -
Chy09g00238 243 SMART dpbb_1 62 139 IPR007112 -
Chy09g00238 243 PANTHER EXPANSIN-A15 10 242 IPR002963 GO:0009664
Chy09g00238 243 SUPERFAMILY Barwin-like endoglucanases 10 167 IPR036908 -
Chy09g00238 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Chy09g00238 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Chy09g00238 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Chy09g00238 243 Gene3D - 149 241 IPR036749 -
Chy09g00238 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Chy09g00238 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Chy09g00238 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Chy09g00238 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Chy09g00238 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Chy09g00238 243 PANTHER EXPANSIN-A5 10 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00238 Chy-Chr9:1968941 Chy10g00315 Chy-Chr10:7887475 4.77E-128 dispersed
Chy07g00932 Chy-Chr7:13528375 Chy09g00238 Chy-Chr9:1968941 7.10E-54 transposed
Chy10g01014 Chy-Chr10:15516342 Chy09g00238 Chy-Chr9:1968941 7.18E-139 wgd
Chy12g01532 Chy-Chr12:19055053 Chy09g00238 Chy-Chr9:1968941 2.15E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00238 K20628 - csv:101220358 512.301