Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00254 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACCCCGACTCCGATACTCCGACTAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCATCACCATCACCATCGCCCACCCTCCTCCACGGCTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCTCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGCTGTCACCGCAATTTCCACCGCCGCGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCCCCAACTCATGTTATTGAGTATCATCCTCACCACCGTCACCACCCACCCCCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCCCCAATCTCGTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTTGGATGGAAAATGCAGAAACGAGATGAAGATATGACAGGGATTGAATATTGA 720 51.39 MDLAPAPITTSSNNTKSPDPDSDTPTKIPPSFTNGVLKRHHHNHHHHHHHRPPSSTAVVSYKECLKNHAATLGAHALDGCGEFMPSPSSTPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYHPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDMTGIEY* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2076065 2085464 + Chy9G159700.1 Chy09g00254 233151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00254 239 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Chy09g00254 239 MobiDBLite consensus disorder prediction 132 163 - -
Chy09g00254 239 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
Chy09g00254 239 Gene3D - 186 237 - -
Chy09g00254 239 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 234 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 176 203 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 1 31 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 181 203 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 1 58 - -
Chy09g00254 239 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Chy09g00254 239 MobiDBLite consensus disorder prediction 37 53 - -
Chy09g00254 239 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 13 234 - -
Chy09g00254 239 SUPERFAMILY Homeodomain-like 188 234 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00254 Chy-Chr9:2076065 Chy12g01373 Chy-Chr12:17926287 1.04E-30 dispersed
Chy09g00254 Chy-Chr9:2076065 Chy09g00255 Chy-Chr9:2090689 5.75E-15 tandem
Chy10g00999 Chy-Chr10:15442294 Chy09g00254 Chy-Chr9:2076065 2.43E-22 wgd
Chy04g01536 Chy-Chr4:21923815 Chy09g00254 Chy-Chr9:2076065 9.46E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18458 PF04770 ZF-HD_dimer 2.20E-28 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00254 - - csv:101213548 412.535