Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00254 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACCCCGACTCCGATACTCCGACTAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCATCACCATCACCATCGCCCACCCTCCTCCACGGCTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCTCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGCTGTCACCGCAATTTCCACCGCCGCGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCCCCAACTCATGTTATTGAGTATCATCCTCACCACCGTCACCACCCACCCCCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCCCCAATCTCGTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTTGGATGGAAAATGCAGAAACGAGATGAAGATATGACAGGGATTGAATATTGA 720 51.39 MDLAPAPITTSSNNTKSPDPDSDTPTKIPPSFTNGVLKRHHHNHHHHHHHRPPSSTAVVSYKECLKNHAATLGAHALDGCGEFMPSPSSTPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYHPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDMTGIEY* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2076065 2085464 + Chy9G159700.1 Chy09g00254 233151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00254 239 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Chy09g00254 239 MobiDBLite consensus disorder prediction 132 163 - -
Chy09g00254 239 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
Chy09g00254 239 Gene3D - 186 237 - -
Chy09g00254 239 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 234 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 176 203 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 1 31 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 181 203 - -
Chy09g00254 239 MobiDBLite consensus disorder prediction 1 58 - -
Chy09g00254 239 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Chy09g00254 239 MobiDBLite consensus disorder prediction 37 53 - -
Chy09g00254 239 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 13 234 - -
Chy09g00254 239 SUPERFAMILY Homeodomain-like 188 234 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00254 - - - csv:101213548 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00254 Chy-Chr9:2076065 Chy12g01373 Chy-Chr12:17926287 1.04E-30 dispersed
Chy09g00254 Chy-Chr9:2076065 Chy09g00255 Chy-Chr9:2090689 5.75E-15 tandem
Chy10g00999 Chy-Chr10:15442294 Chy09g00254 Chy-Chr9:2076065 2.43E-22 wgd
Chy04g01536 Chy-Chr4:21923815 Chy09g00254 Chy-Chr9:2076065 9.46E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18458 PF04770 ZF-HD_dimer 2.20E-28 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00254 Chy_Chr09 FPKM 48.926792 51.986317 10.172891 9.533506 37.522869 32.410358 34.581825 7.505933 8.28194 6.13893