Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00260 ATGGCGGAACCGGTTACAGAGCCTAAGGCATTACCCGAACCCGAAAAGAAGAAAGAACAGAGCCTTCCTTTTCACCAACTCTTCTCTTTTGCAGACAAATACGACTGGTTTCTCATGATCCTTGGTAGTTTTGGTGCCATTATCCACGGCTCTTCCATGCCGGTTTTCTTCCTCCTTTTCGGCGAAATGGTTAACGGATTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCTGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAAAGGCAAGTGAGCACATTAAGAAAAAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTTAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGTGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACTTTCTTGGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGATTAGCTCTTTTGAGTATAGCAGTAATTCCTGGAATAGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGTCTTACTTCAAAGAGTCGAGAATCCTATGCAAATGCTGGCATCATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCTTTGAATTCCTATTCAGATTCAATTCAAAACACTTTGAAAATCGGATACAAAGCAGGAATGGCTAAGGGGTTGGGTCTTGGTTGTACTTATGGCATTGCTTGTATGTCTTGGGCACTTGTTTTCTGGTATGCTGGTGTTTTCATCCGAAACGGACAAACAGACGGTGGTAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGTTTGGGGCAGTCATTTTCCAATTTGGGAGCATTTAGTAAAGGGAAAGCAGCAGGGTATAAATTGATGGAGATTATCAAACAAAAGCCTACAATAATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTAACCTTTAGCTACCCATCTAGACCGGATGTGATGATCTTTAGAGATTTCTCCATTTTCTTCCCGGCCGGGAAAACGGTGGCTGTTGTTGGCGGTAGCGGTTCCGGGAAAAGCACTGTTGTTTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAGGTTTTATTAGATAATGTAGACATCAAGACACTGCAATTGAAATGGCTACGCGATCAAATTGGTTTAGTGAATCAAGAACCGGCTTTGTTTGCAACCACCATATACGAAAACATTCTCTACGGCAAACCCGACGCCACGACGGTGGAGGTTGAAGCTGCCGCGGCTGCAGCCAATGCACATAGCTTTATCACATTGCTCCCCAATGGCTACGATACCCAAGTGGGGGAAAGAGGATTACAACTCTCCGGTGGCCAAAAACAGAGAATCGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACTAGTGCTCTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGATCGTTTAATGGTTGGAAGAACTACGGTGGTAGTCGCACATCGATTATCAACCATAAGAAATGTCGATTCAATTGCAGTTATACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGACGAACTAATCACTAAATCCGGTGCTTATTCTTCGTTAATCCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCGAATCCATCTACACGTCGAACACGATCGTCGCGGCTTAGCCATTCATTATCAACAAAATCATTAAGCCTCCGCTCCGGCAGTCTCAGGAATTTGAGCTATTCGTATAGCACCGGTGCTGATGGCCGAATCGAAATGGTCTCGAACGCCGAAACCGATCGGAAAAACCCTGCCCCAGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGCCCTGAATGGCCGTATTCAATAATGGGAGCTGTTGGCTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGCAACATGATTGAGGTTTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATCGGGATTGGGGTTTACGCAGTTGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGCGAAAATCTCACAACCAGAGTCAGAAGAATGATGCTCGCAGCTATATTGAGGAATGAAGTCGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTAGCAACTGATGCAGCTGATGTAAAATCCGCCATAGCTGAAAGGATATCAGTGATATTACAAAACATGACTTCACTTTTCACATCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCTTTCCCTCTACTTGTTCTTGCCAACATGGCTCAGCAACTTTCATTGAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCAAAAACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTAGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTTTGTTTCGCCATGAGCTTCGTGTCCCACAGCGACAGAGTCTCCGTCGAAGCCAAACGGCGGGGATTCTTTTTGGTATATCACAGCTAGCTCTTTATGCTTCTGAAGCTCTAGTGTTGTGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTTTCTAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCAGAAACTGTTAGTCTTGCTCCCGAGATCGTTAGAGGTGGTGAATCGATCGGTTCTGTTTTCTCGATTCTCGATCGCCCAACGAGGATTGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACACTTCGTGGGGAAATTGAACTACGACATGTTGACTTTGCATACCCGTCTCGACCTGATGTCATGGTGTTTAAAGATCTCAATTTGAGAATCAGAGCTGGTCAGAGCCAGGCATTGGTTGGAGCTAGTGGATCAGGGAAGAGTTCAGTGATTGCTTTGATCGAGAGATTCTACGATCCGCTTACCGGTAAAGTTATGATCGACGGGAAGGACATTCGACGCCTAAACTTACAATCCTTGAGGCTGAAAATTGGATTAGTACAACAAGAGCCAGCCTTATTTGCTGCCAGCATTTTTGATAACATTGCATATGGAAAAGATGGAGCAACAGAATCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTTCATGGCTTTGTAAGTGGACTACCTGATGGCTACAACACACCAGTTGGAGAAAGGGGAGTTCAGCTATCTGGTGGCCAAAAACAACGCATAGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGATGAGGCCACCAGCGCCCTCGACGCCGAGTCTGAGTGTGTGCTGCAAGAGGCTCTCGAAAGGCTCATGAGGGGCCGAACCACGGTGGTTGTAGCACATCGCTTATCCACAATCAGGAGTGTGGACAGCATTGGTGTGGTCCAAGATGGGCGCATTGTTGAACAAGGTAGCCATAACGAGCTGCTAAGCCGAGCCGAGGGGTCTTACTCAAGGCTTTTGCAGCTGCAACATCAACATATATGA 3753 44.79 MAEPVTEPKALPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSFGAIIHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTVEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHDELITKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLTGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATESEVIEAARAANVHGFVSGLPDGYNTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRSVDSIGVVQDGRIVEQGSHNELLSRAEGSYSRLLQLQHQHI* 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2136109 2142221 + Chy9G159760.1 Chy09g00260 233157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00260 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Chy09g00260 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Chy09g00260 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Chy09g00260 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy09g00260 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Chy09g00260 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Chy09g00260 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy09g00260 1250 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy09g00260 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Chy09g00260 1250 Gene3D ABC transporter type 1, transmembrane domain 86 979 IPR036640 GO:0005524|GO:0016021
Chy09g00260 1250 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524|GO:0016021
Chy09g00260 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Chy09g00260 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Chy09g00260 1250 Gene3D - 361 624 IPR027417 -
Chy09g00260 1250 Gene3D - 1006 1247 IPR027417 -
Chy09g00260 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Chy09g00260 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Chy09g00260 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Chy09g00260 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Chy09g00260 1250 SMART AAA_5 1035 1207 IPR003593 -
Chy09g00260 1250 SMART AAA_5 390 582 IPR003593 -
Chy09g00260 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Chy09g00260 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Chy09g00260 1250 Gene3D ABC transporter type 1, transmembrane domain 980 1005 IPR036640 GO:0005524|GO:0016021
Chy09g00260 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy09g00260 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02043 Chy-Chr4:26022703 Chy09g00260 Chy-Chr9:2136109 0 dispersed
Chy04g02044 Chy-Chr4:26035811 Chy09g00260 Chy-Chr9:2136109 1.95E-127 dispersed
Chy04g02045 Chy-Chr4:26039706 Chy09g00260 Chy-Chr9:2136109 1.69E-119 dispersed
Chy11g00542 Chy-Chr11:5992674 Chy09g00260 Chy-Chr9:2136109 4.82E-89 dispersed
Chy11g00543 Chy-Chr11:6005621 Chy09g00260 Chy-Chr9:2136109 1.89E-98 dispersed
Chy11g00544 Chy-Chr11:6010774 Chy09g00260 Chy-Chr9:2136109 1.42E-13 dispersed
Chy01g01442 Chy-Chr1:20011375 Chy09g00260 Chy-Chr9:2136109 2.14E-09 transposed
Chy01g02148 Chy-Chr1:26130610 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy02g00187 Chy-Chr2:1283961 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy02g01155 Chy-Chr2:8277308 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy04g00113 Chy-Chr4:1023316 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy04g00404 Chy-Chr4:3600082 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy04g00994 Chy-Chr4:14664195 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy04g01921 Chy-Chr4:25185946 Chy09g00260 Chy-Chr9:2136109 1.98E-57 transposed
Chy05g00781 Chy-Chr5:11094799 Chy09g00260 Chy-Chr9:2136109 6.24E-131 transposed
Chy09g00292 Chy-Chr9:2496880 Chy09g00260 Chy-Chr9:2136109 8.73E-122 transposed
Chy09g00754 Chy-Chr9:9993908 Chy09g00260 Chy-Chr9:2136109 1.40E-88 transposed
Chy10g00728 Chy-Chr10:13553718 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy10g00827 Chy-Chr10:14217446 Chy09g00260 Chy-Chr9:2136109 0 transposed
Chy11g00835 Chy-Chr11:11871920 Chy09g00260 Chy-Chr9:2136109 9.12E-07 transposed
Chy11g01177 Chy-Chr11:17897843 Chy09g00260 Chy-Chr9:2136109 1.68E-55 transposed
Chy12g01487 Chy-Chr12:18763428 Chy09g00260 Chy-Chr9:2136109 2.24E-98 transposed
Chy12g01330 Chy-Chr12:17646177 Chy09g00260 Chy-Chr9:2136109 1.14E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00260 K05658 - csv:101212585 2305.41