Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00265 | ATGGCTTCTCCTCATCACCATTCCCATAGTTTCATGTTCCAATCCCGTCCCGCCCCCGATCACCACGAATACATCCCATCCGCTTCCTTCAACACCATCCCTTCCTGCCCTCCTCACCTCTACTTTCACGATGGGGTTGTTCCGGTGATGATGAAGAGATCAATGTCATTTTCAGAAGTTGAGAATGGGTGCGAGGATGTGAACGGCGATGAAGGGTTGTCAGACGACGGATTGGCGTTGGGAGAGAAGAAGAAGAGATTAAATTTAGAGCAAGTGAAAGCATTGGAGAAGAGTTTCGAGGTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAATTAGCCAAAGCATTGGGGTTGCAACCAAGACAAATTGCTATTTGGTTTCAGAATAGAAGAGCCAGATGGAAAACTAAGCAATTGGAAAGAGATTATGAGGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACAAAACTCCATGCAGAGTTATTAGCATTGAAAACCAAAGACTCCGGCGAGACGGCGGGGCGCGGCGGTGCCACCATGAACTTAAAGAAAGAAAACGAACGTTGTTGGAGCAGCGATAACAGTTGTGACATCAACCTCGACATCTCGAACACACAAACACCAATAGGTGGCAGTGGCGGAAGAGGATGTTCTCAACCAGGAATGATCAAAGATCTTTTCCCCTCTGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACATGGGTCATCCCGATCAACGGTGGATCAGCATCCTCAAGTGATTCAAGAAGAGAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAGCAAACTGCAGCAGCAGCTGGGTTCTGGCCATGGAGTACTTCGGATCAAAATTCTCATTTTCATTAA | 918 | 46.51 | MASPHHHSHSFMFQSRPAPDHHEYIPSASFNTIPSCPPHLYFHDGVVPVMMKRSMSFSEVENGCEDVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGETAGRGGATMNLKKENERCWSSDNSCDINLDISNTQTPIGGSGGRGCSQPGMIKDLFPSAAFRSAAITQLLQHGSSRSTVDQHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSTSDQNSHFH* | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2206181 | 2209479 | + | Chy9G159810.1 | Chy09g00265 | 233162 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00265 | 305 | SUPERFAMILY | Homeodomain-like | 81 | 140 | IPR009057 | - | |
| Chy09g00265 | 305 | Pfam | Homeobox associated leucine zipper | 138 | 178 | IPR003106 | GO:0006355|GO:0043565 | |
| Chy09g00265 | 305 | SMART | HOX_1 | 81 | 142 | IPR001356 | GO:0003677 | |
| Chy09g00265 | 305 | Coils | Coil | 130 | 171 | - | - | |
| Chy09g00265 | 305 | Gene3D | - | 79 | 146 | - | - | |
| Chy09g00265 | 305 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 | 2 | 305 | - | - | |
| Chy09g00265 | 305 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 2 | 305 | IPR045224 | GO:0003700 | |
| Chy09g00265 | 305 | ProSitePatterns | 'Homeobox' domain signature. | 113 | 136 | IPR017970 | GO:0000981|GO:0006355 | |
| Chy09g00265 | 305 | ProSiteProfiles | 'Homeobox' domain profile. | 82 | 138 | IPR001356 | GO:0003677 | |
| Chy09g00265 | 305 | Pfam | Homeodomain | 83 | 136 | IPR001356 | GO:0003677 | |
| Chy09g00265 | 305 | CDD | homeodomain | 83 | 139 | IPR001356 | GO:0003677 | |
| Chy09g00265 | 305 | PRINTS | Lambda-repressor HTH signature | 109 | 118 | IPR000047 | GO:0003677 | |
| Chy09g00265 | 305 | PRINTS | Lambda-repressor HTH signature | 118 | 134 | IPR000047 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy09g00265 | Chy10g00972 | CCT | |
| Chy09g00265 | Chy10g00972 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy08g00904 | Chy-Chr8:16431202 | Chy09g00265 | Chy-Chr9:2206181 | 6.78E-32 | dispersed | |
| Chy09g00265 | Chy-Chr9:2206181 | Chy09g00328 | Chy-Chr9:2838024 | 4.78E-35 | dispersed | |
| Chy10g00985 | Chy-Chr10:15331665 | Chy09g00265 | Chy-Chr9:2206181 | 7.33E-80 | wgd | |
| Chy12g01323 | Chy-Chr12:17588638 | Chy09g00265 | Chy-Chr9:2206181 | 2.77E-39 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18462 | PF00046 | Homeodomain | 2.30E-15 | CL0123 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00265 | K09338 | - | csv:101212093 | 619.387 |