Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00272 ATGGGGGACAAAGATGAAGTCTTGGAAGCTGTTGTGAAGGAAGCTGTTGATTTGGAGAACGTTCCACTTGAAGAGGTTTTTCAAACGTTGAGATGTAATAAAAATGGTTTGACAACAGAGGCTGCTCGTGAGAGGTTGGCCATTTTTGGGCATAACAAGCTTGAAGAAAAGAAGGAGAGTAAGCTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTTTAGCTAATGGAGGAGGGAAACCTCCAGATTGGCAGGATTTTGTTGGGATCATAACTTTGTTACTTATCAATTCGACTATTAGTTTTATAGAGGAGAACAATGCTGGAAATGCTGCAGCCGCTCTCATGGCTCATCTTGCTCCGAAAGCTAAGGTTCACTATGATCCCCATGCTTATAAATCACGAACTCTTATAGATGAGTATAATGTTCTTAGAGATGGAAAGTGGGTAGAAGAGGAAGCATCAGTCCTTGTTCCTGGTGATATAATTAGCGTCAAGCTCGGGGACATTATTCCTGCTGATGCTCGCCTACTTGAAGGTGATCCATTAAAGATCGATCAATCTGCTCTCACAGGTGAGTCGCTTCCTGTGACTAAAGGCCCCGGCGACAGTGTCTATTCAGGTTCAACATGCAAGCAGGGAGAAATTGAAGCAGTGGTTATTGCTACTGGTGTTCATACATTCTTTGGCAAAGCTGCTCATCTTGTAGACTCCACGAATCAAGTGGGTCACTTTCAAAAGGTCTTGACTGCGATTGGAAATTTCTGCATATGTTCCATTGTTGTGGGTATGGTTGTTGAGATTATTGTCATGTACCCAATCCAACATCGGCCGTATCGACCAGGGATCGACAATCTCCTAGTTCTCCTAATTGGAGGAATTCCCATTGCAATGCCAACTGTTTTGTCGGTCACAATGGCGATTGGATCACACCGTCTATCTGAACAGGGAGCTATCACTAAACGAATGACTGCAATAGAAGAAATGGCTGGAATGGACGTGCTCTGTAGTGACAAAACAGGAACACTGACCTTAAATAAGCTTACTGTTGACAAGACTCTGATAGAGGTTTTTGCCAAGGGAGTGGACGTGGATACTGTCGTTCTCATGGCAGCTCGAGCATCTCGAATTGAAAATCAAGATGCAATTGATGCTGCTATAGTAGGGATGTTGAGTGATCCAAAAGAGGCACGAGCAGGCATTCAAGAGGTTCACTTTCTTCCATTCAACCCAACTGACAAGCGAACTGCCCTGACATACACTGATACTGATAGTAAAATGCATCGAGTCAGCAAAGGTGCTCCAGAGCAGATCTTGAATCTTGCACACAACAAATCAGAGATAGAAAGAAGAGTTCACGCTGTGATCGATAAGTTTGCAGAGCGAGGATTGCGCTCTCTTGCAGTGGCATACCAAGAAGTTCCAGATGGAAGAAAGGAGAGTCATGGTGGCCCATGGCAATTCATTGGTCTAATGCCTCTGTTTGACCCACCTAGACATGATAGTGCAGAGACAATTAGGAGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTGGCCATAGGAAAGGAAACAGGACGCCGGCTTGGGATGGGAACGAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATTTCTGGATTGCCTGTTGATGAGTTAATTGAAAAGGCTGATGGATTTGCTGGTGTATTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGAAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCCCCTGCTCTTAAGAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACTGATGCAGCTCGTAGTGCTTCTGACATTGTTCTTACTGAGCCTGGTCTTAGTGTTATTATAAGTGCCGTTCTAACCAGCCGAGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCCGTTTCAATTACAATTCGTATCGTGCTTGGATTCATGCTGCTGGCCCTTATATATCAATTTGACTTCCCACCTTTCATGGTTCTAATCATTGCTATTCTTAATGATGGTACCATAATGACAATATCGAAGGATAGAGTGAAACCGTCTCCTCTGCCAGATAGCTGGAAACTGGCAGAGATTTTTGGCACTGGAATTATACTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCAGCTTACAAAACGGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAAAAGATGGACGAGGATGATTTCCGAAAGCTGGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCCCTCATCTTTGTGACGAGATCTCGAAGTTGGTCATTTGTGGAGCGTCCTGGCTTGTTATTAGTTGCAGCTTTTGTTATTGCTCAGCTAATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATTGAAGGAATTGGCTGGGGTTGGGCTGGTGTGGTTTGGCTTTACAACCTCGTCTTTTATTTCCCACTTGACATAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAAGATTTTGGGAAGGAAGAGCGCGAGCTCAAATGGGCACATGCACAAAGGACACTTCATGGCCTGCAGCCACCTGAGGCTAAGATGTTCTCCGACCGCACAACTTATACAGAACTCAATCAAATGGCAGAGGAAGCAAAACGCCGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACACTGAAAGGTCATGTCGAATCAGTGGTGAGGCTGAAAGGTCTTGATATCAACACGATTCAGCAGTCATACACAGTATAG 2925 43.79 MGDKDEVLEAVVKEAVDLENVPLEEVFQTLRCNKNGLTTEAARERLAIFGHNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAHLAPKAKVHYDPHAYKSRTLIDEYNVLRDGKWVEEEASVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIVVGMVVEIIVMYPIQHRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKGVDVDTVVLMAARASRIENQDAIDAAIVGMLSDPKEARAGIQEVHFLPFNPTDKRTALTYTDTDSKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQKMDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLVFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSDRTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV* 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2252574 2258439 - Chy9G159880.1 Chy09g00272 233169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00272 974 SFLD C1.7: P-type atpase like 331 659 - -
Chy09g00272 974 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 870 IPR023298 -
Chy09g00272 974 Gene3D - 923 974 - -
Chy09g00272 974 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 155 369 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 583 691 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 Pfam haloacid dehalogenase-like hydrolase 345 622 - -
Chy09g00272 974 Gene3D - 361 508 IPR023299 GO:0000166
Chy09g00272 974 ProSitePatterns E1-E2 ATPases phosphorylation site. 351 357 IPR018303 -
Chy09g00272 974 PANTHER CALCIUM-TRANSPORTING ATPASE 3 954 - -
Chy09g00272 974 PRINTS H+-transporting ATPase (proton pump) signature 580 596 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 PRINTS H+-transporting ATPase (proton pump) signature 465 483 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 PRINTS H+-transporting ATPase (proton pump) signature 639 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 PRINTS H+-transporting ATPase (proton pump) signature 784 805 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 PRINTS H+-transporting ATPase (proton pump) signature 608 624 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy09g00272 974 PANTHER PLASMA MEMBRANE ATPASE 3 954 - -
Chy09g00272 974 SFLD p-type atpase 331 659 IPR044492 -
Chy09g00272 974 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Chy09g00272 974 Gene3D - 134 236 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 608 627 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 525 535 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 631 643 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 503 514 - -
Chy09g00272 974 PRINTS P-type cation-transporting ATPase superfamily signature 349 363 - -
Chy09g00272 974 CDD P-type_ATPase_H 36 865 IPR006534 GO:0008553|GO:0016021|GO:0120029
Chy09g00272 974 Pfam E1-E2 ATPase 153 328 - -
Chy09g00272 974 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 830 IPR006534 GO:0008553|GO:0016021|GO:0120029
Chy09g00272 974 SUPERFAMILY HAD-like 345 655 IPR036412 -
Chy09g00272 974 SUPERFAMILY Calcium ATPase, transduction domain A 154 249 IPR008250 -
Chy09g00272 974 Coils Coil 925 945 - -
Chy09g00272 974 Gene3D - 96 839 - -
Chy09g00272 974 Gene3D - 346 645 IPR023214 -
Chy09g00272 974 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02522 Chy-Chr2:28585261 Chy09g00272 Chy-Chr9:2252574 0 dispersed
Chy07g01591 Chy-Chr7:20061196 Chy09g00272 Chy-Chr9:2252574 0 dispersed
Chy03g00815 Chy-Chr3:11339024 Chy09g00272 Chy-Chr9:2252574 3.72E-15 transposed
Chy05g01160 Chy-Chr5:16070029 Chy09g00272 Chy-Chr9:2252574 1.98E-17 transposed
Chy12g01318 Chy-Chr12:17564665 Chy09g00272 Chy-Chr9:2252574 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00272 K01535 - csv:101211115 1785.0