Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00284 ATGGGACTCTGCGGCTCCAAGCCGGAAGGTTGCGTCCGAGGAAGACTGGTTCCTTCCGGAAAGAGGAATCGGAGACGGAGAAGAAGAAGTATTAAGCGCCGAACTTCTTCTTTGAAGCTTGATTCGACTTCTGCTCCTAATCGCCCTCATTCTACTCCTACATGTGCAGCTAGAGGAAGTGTAGATGCGGCATGGTTTGATTCTACTTCCGTCCTTGATTCTGAATTCGACGACGAGTTTTATAGCGTTCGTGAAGATGTATTGTCTTTAAATGGCTCTGAGTTCGCATCCAGATTAAGTGTTTCATCTCCAAAGCATCGAAACAATAAAGAACATAATGAAAATACTGCGACAATTCTAGCTAGGAGATCTAGTGATTGTAGAAATGATTTGACCTCCATTTTTGTAGATGAAGTTTCCACAGAGGGTGAAAATGGTAAAGGAGATGAGGCTGCTGAGTCGAATAATTGTGGGATTCTTCCAAATACTTGTTTGCCATATCTGGCTGCTGCTGGACCCTCAGTTGAAAAGAGGAGACAAACAAACCAAGGAGCCCCAAATCCAAATCTAAGGAGAAAAGCGTCGTCAAAACTCTCATTTAAATTGAAGGAAGGACATAGTGATCCTACGATATTTTCACCGAGGGCACCTTTACAAAAACTAATAGCTGGCACTTCAGTTCCGCACTGTCCAATAGGGAAGAGAATGCCCAATTGCTGGTCACCAATTGACCCCAGTGTTTTTAAAGTTCGAGGGAAGAATTATTTTAGAGATAAGAAGAAAGAGTTTGCTCAAAATTGTGCTGCGTATTATCCCATTGGAGCTGATGTCTTCTTGTCTCAGAGAAAGATTGATCATATTGCCCGTTTTGTTGAACTTCCTGCCATAAATCCAGCTGGAGATGTCCCTTCTATTCTTGTAGTAAACGTTCAGGTACCATTATATCCTGCTACAATCTTTCAAGGAGAAAATGATGGTGAAGGAATGAGCGTGGTGATGTACTTTAAGCTATCCGAGAGTTATTTGAAGGAACTTCCAAGTTCTTTCCCGGAACATTTTACTAAATTAATTAATGATGAAGTCGAAAGGGTTAGAGGTTTCCCTATGGATAGCATTGTACCCTTCAGGGAAAGATTGAAAATTATGGGGCGAGTGGCAAATGTCGAGGACCTTCATTTGAGTGCAGCTGAGAAGAAGCTTATGAATGCGTACAATGAAAAACCTGTCCTCTCACGACCTCAACATGAGTTTTACTTGGGGGAGAAATACTTGGAAATCGATTTGGACATGCACAGGTTTAGCTACATTTCAAGAAAAGGTCTCGAAACGTTTAACGATAGACTGAAGCTGTGTATCTTGGATTTTGGCTTGACAGTTCAGGGAAACAAGGCAGAAGACTTACCAGAACATATGTTATGTTGTATTCGATTAAACGAAATCGATTACTCCAACCATCAGTCATTGAACATTTAA 1473 41.41 MGLCGSKPEGCVRGRLVPSGKRNRRRRRRSIKRRTSSLKLDSTSAPNRPHSTPTCAARGSVDAAWFDSTSVLDSEFDDEFYSVREDVLSLNGSEFASRLSVSSPKHRNNKEHNENTATILARRSSDCRNDLTSIFVDEVSTEGENGKGDEAAESNNCGILPNTCLPYLAAAGPSVEKRRQTNQGAPNPNLRRKASSKLSFKLKEGHSDPTIFSPRAPLQKLIAGTSVPHCPIGKRMPNCWSPIDPSVFKVRGKNYFRDKKKEFAQNCAAYYPIGADVFLSQRKIDHIARFVELPAINPAGDVPSILVVNVQVPLYPATIFQGENDGEGMSVVMYFKLSESYLKELPSSFPEHFTKLINDEVERVRGFPMDSIVPFRERLKIMGRVANVEDLHLSAAEKKLMNAYNEKPVLSRPQHEFYLGEKYLEIDLDMHRFSYISRKGLETFNDRLKLCILDFGLTVQGNKAEDLPEHMLCCIRLNEIDYSNHQSLNI* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2388821 2392611 - Chy9G160000.1 Chy09g00284 233181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00284 490 MobiDBLite consensus disorder prediction 14 56 - -
Chy09g00284 490 MobiDBLite consensus disorder prediction 175 194 - -
Chy09g00284 490 MobiDBLite consensus disorder prediction 18 34 - -
Chy09g00284 490 PANTHER PLANT/F14N23-31 PROTEIN 1 488 - -
Chy09g00284 490 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 240 481 IPR009769 -
Chy09g00284 490 PANTHER CW14 PROTEIN 1 488 - -
Chy09g00284 490 MobiDBLite consensus disorder prediction 176 194 - -
Chy09g00284 490 MobiDBLite consensus disorder prediction 37 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00284 - - - mcha:111006428 857.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00284 Chy10g00953 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00219 Chy-Chr9:1834706 Chy09g00284 Chy-Chr9:2388821 1.73E-113 dispersed
Chy10g00953 Chy-Chr10:15095649 Chy09g00284 Chy-Chr9:2388821 2.79E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004043 3 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00284 Chy_Chr09 FPKM 3.232961 3.163028 4.322788 6.882868 20.427847 23.220051 18.355518 9.857327 10.671972 15.861312