Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00312 ATGGAGTTTCAAGAAGGTTTGATGAAGTTTATGTTTCATGAAGATGTTAAACCCAACTGGGTTTTTGGGAAGGATTCTCCATCTGTTGCTGTTTCGGAGATAAGTAGTACTCCTAGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCACCATTTCCGTCAAAACCAAAACCCCATTTTAAGGAAATACCTAAAGAATTGCTCTGTCCCATTACTGGGTCTTTAATGGCGGATCCTGTGATTGTTTCCTCTGGTCATACTTTTGAAGCTGCTTGTGTTCAGGTTTGTAAAGATTTAGGGGTGAAACCGACTTTGTTAGACGGTTCTAAGCCGGATTTCTCATCTGTGATTCCAAATCTAGCTCTTAAATCCACCATTTTCAATTGGTGTAAAAATTCCTCTTCTGAACCTCCTCAACCCCTTGATTTCTCCTCTGCTGAAAAGCTTGTTCGTAAATTTGTTGCGGCTCATAGTAAAAGCGATGAGGAATTGATTCAAGGGGTTGCTGAGACTCCTGTGGTTCGATTCAACCATGCCGCCACTGAAGTTACTCGTCGAAGTTCTCATTTTCATTCGAGTTCCGATGAATCTGTAAGCGCCGTTGTTCCTACTCTGCCTCTTCCTCTTGCGATTCGCCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGATAACGAGATCATTGGTACTCTTAACTTGCCTGAAGAGGAAGAGATCGTCGTGAAGCTTAAAAGTTCTCAGGTTATTGAGATTGAAGAGGCTGTGACGACGTTGAGAAAAATTACTAGAACTCGAGAGGACAGTAGAGTTCATCTCTGTTCTCCTATGATTCTCTCTGCTTTGCGATCTCTCATCGTCTCAAGGTACACTGGCGTTCAAGTGAACTCAGTTGCGGCGCTTGTAAATCTATCTTTAGAGAATTTGAACAAGGTGAAGATCGTGCGGTCGGGGATCCTCCCTAATTTGATCGATGTTCTGAAAGGGGGTTCACCGGAGGTTCAAGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGACAACAACAAGACGGCGATCGGCGTATTGGGTGCTCTACCACCATTGATACGGCTGTTGTTATCCGACTCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCCCACGTTCAGAGCAACCGTTCGAAGTTAGTGAAACTTGGGTCGGTGCCGATACTTCTCGGGATGGTGAAATCCCGTCACATGGCCGGCCGTATTTTGCTGACTTTGTGTAATTTAGCAGCTTGTTTTGAGGGCCGGGCGGCGTTGTTAGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGAGAAAACGAGTTGGACTCTGAATCAACTCGGGAGAGTTGTGTGGCGGTTCTGTTTGGACTGAGTTTCGGCGGATTGAGGTTCAAAGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAGTGGAGAAAAATGGGAGTGAAAGATCAAAAGAGAAGGTGAAGAGGATGATGGAGTATATGAAAGCCAGAGATGAAGAAGCTGAGGATGTGAACTGGGAGGAATTGCTCGACTCAGGTTGTTTCGGTAGCCGAACTCGGTGTCGACTTGGTGCCGGAATGGACAGATCCACCGCAAACTCATCAGAATTCTGA 1662 46.45 MEFQEGLMKFMFHEDVKPNWVFGKDSPSVAVSEISSTPRRKWRIFNRSSSSPFPSKPKPHFKEIPKELLCPITGSLMADPVIVSSGHTFEAACVQVCKDLGVKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPQPLDFSSAEKLVRKFVAAHSKSDEELIQGVAETPVVRFNHAATEVTRRSSHFHSSSDESVSAVVPTLPLPLAIRPSCCSSSSSSDNEIIGTLNLPEEEEIVVKLKSSQVIEIEEAVTTLRKITRTREDSRVHLCSPMILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDNNKTAIGVLGALPPLIRLLLSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPILLGMVKSRHMAGRILLTLCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSFGGLRFKGLAKTAGAMDVFMAVEKNGSERSKEKVKRMMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2675397 2677058 + Chy9G160280.1 Chy09g00312 233209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00312 553 CDD RING-Ubox 69 104 - -
Chy09g00312 553 Pfam U-box domain 64 134 IPR003613 GO:0004842|GO:0016567
Chy09g00312 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 136 IPR013083 -
Chy09g00312 553 SMART arm_5 347 387 IPR000225 GO:0005515
Chy09g00312 553 SMART arm_5 388 426 IPR000225 GO:0005515
Chy09g00312 553 SMART arm_5 265 305 IPR000225 GO:0005515
Chy09g00312 553 SMART arm_5 427 470 IPR000225 GO:0005515
Chy09g00312 553 SMART arm_5 306 346 IPR000225 GO:0005515
Chy09g00312 553 SUPERFAMILY RING/U-box 57 138 - -
Chy09g00312 553 SUPERFAMILY ARM repeat 242 489 IPR016024 -
Chy09g00312 553 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 541 - -
Chy09g00312 553 Pfam Armadillo/beta-catenin-like repeat 309 345 IPR000225 GO:0005515
Chy09g00312 553 Pfam Armadillo/beta-catenin-like repeat 349 386 IPR000225 GO:0005515
Chy09g00312 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 354 IPR000225 GO:0005515
Chy09g00312 553 PANTHER U BOX DOMAIN-CONTAINING 39 541 - -
Chy09g00312 553 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Chy09g00312 553 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Chy09g00312 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515
Chy09g00312 553 Gene3D - 234 509 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00312 Chy-Chr9:2675397 Chy02g00450 Chy-Chr2:2836400 1.35E-37 dispersed
Chy12g01293 Chy-Chr12:17396405 Chy09g00312 Chy-Chr9:2675397 2.23E-147 wgd
Chy02g02552 Chy-Chr2:28783066 Chy09g00312 Chy-Chr9:2675397 6.95E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00312 - - csv:105434412 1021.54