Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00321 ATGTCTTCAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAGAAGAAGAAGAAATGGAGGGTTTGATGATCTTTAGTGCAATGATAATGGTGGAAATTATGGATGTGATCACATCAACACTAAGCAAAGCTGCCATGTCCAAAGGAATGAACAACTTGGTTTTTGCTGTCTATTCTAATTCTCTTTCCACTTTCATTTTTCTTCCTTTTCTCCTCTTTTCCGGATTCAGAGATAAACAGGTTGCCCCTCTATCTTTCTATATGATCCTTGGCTTCTCTCTCCTTGGCCTTAATGGGAGTGTGGGGCAGATATTGGCATATACAGGAATAAAGTATAGCTCACCAGTTCTTTTATCAGCACTCTCAAATCTCATTCCCATTTTCACCTTTCTTCTTGCTCTTCTTTTCAGAATGGAGAAGGTTGATTTGAGGAGCAGCAGTGGGAAAGCCATATGTGTTGGAACTATTTTGGCTGTTTCAGGAGCTTCCTTAATAACTTTATACAAAGGCCCATTGTTACTCAATCATATCTCTTCTTCTAATTCCTTTGAGAAACAAGAAGAAGATGATCATCATCATCATATACTACTCTCACACCATTCAAATTGGGTCCTGGGAGGTTTTCTCTTTCTATTGGCGAGTTTACTCTCAGCAAATTGGCACATTGTTCAGACATGGTTTGTTAAGAAGTACCCAACCAAAAAAATTACAAATCTATTCTTCTTCACATTATCCATGGCAGTCCAAACCGCAGCTTTCGCCATCATGGTCGAGAAAAACACAACTGCTTGGAAACTCCAACCCGACATCGAAATGGTCACTATCGCAACCTCGGGTATAGGGGGTGTGGTTCGTATTGGAGTCCACATATGGTGCTTGCAAAGGAAGGGCCCTCTTTATGTTGTAATGTTCAAACCCCTTGGCATGGTGGTTGCCATCCCCTTGGTTGTCACATTTCTTCATGAACCACTCTATCTTGGAAGTGTGATTGGTTCCATTGTGATTGGGTGTGGGTTCTATTGTGTGATTTGGGGTCAGATCAAACAATTGGATTTGACCTTACTCTCTTCTGCTTCTCACTCACAATCGGCCTTTGAAGAATCACCCTCGGTCCCTCTTTTGTCTCACCAACACTCTTAA 1152 41.15 MSSKRRRRRRRRRRRRRREEEEMEGLMIFSAMIMVEIMDVITSTLSKAAMSKGMNNLVFAVYSNSLSTFIFLPFLLFSGFRDKQVAPLSFYMILGFSLLGLNGSVGQILAYTGIKYSSPVLLSALSNLIPIFTFLLALLFRMEKVDLRSSSGKAICVGTILAVSGASLITLYKGPLLLNHISSSNSFEKQEEDDHHHHILLSHHSNWVLGGFLFLLASLLSANWHIVQTWFVKKYPTKKITNLFFFTLSMAVQTAAFAIMVEKNTTAWKLQPDIEMVTIATSGIGGVVRIGVHIWCLQRKGPLYVVMFKPLGMVVAIPLVVTFLHEPLYLGSVIGSIVIGCGFYCVIWGQIKQLDLTLLSSASHSQSAFEESPSVPLLSHQHS* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2758108 2763536 - Chy9G160370.1 Chy09g00321 233218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00321 383 PANTHER WAT1-RELATED PROTEIN 29 360 - -
Chy09g00321 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 165 - -
Chy09g00321 383 Pfam EamA-like transporter family 32 162 IPR000620 GO:0016020|GO:0016021
Chy09g00321 383 PANTHER WAT1-RELATED PROTEIN 29 360 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00321 - - - csv:101217661 645.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy04g01479 Chy09g00321 CCT
Chy04g01479 Chy09g00321 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01478 Chy-Chr4:21426457 Chy09g00321 Chy-Chr9:2758108 4.29E-60 dispersed
Chy09g00321 Chy-Chr9:2758108 Chy10g00923 Chy-Chr10:14895853 1.76E-49 dispersed
Chy09g00320 Chy-Chr9:2737732 Chy09g00321 Chy-Chr9:2758108 3.14E-79 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g762 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02523 Cam05g2708 Cec05g2741 Cco05g2779 Clacu05g2711 Cmu05g2565 Cre05g2679 Cone13ag1023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00321 .
Vvi14g1392 Blo10g00468 . . . . . . . . Cmo11g01705 . . . . Sed02g0070 . Cpe13g00914 Bhi06g00489 Tan11g0599 Cmetu09g0872 . Hepe02g3119 . Lcy10g0275 Cla10g01377 Cam10g1233 Cec10g1461 Cco10g1432 Clacu10g1435 Cmu10g2203 Cre10g1586 . . Cone2ag0146 Cone16ag0908 Lsi02g01545 Csa05g02916 Chy04g01479 Cme04g01914 . . . . . . . . . Cmo04g02852 Cmo15g00335 Cma04g02720 Cma15g00320 Car04g02626 Car15g00306 . Cpe01g02361 Bhi11g03089 . . . . . . Cla09g01838 . Cec09g1995 Cco09g2088 . . Cre01g0574 . Csa03g03910 Chy09g00321 Cme09g00340
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004025 2 2 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 3 0 1 1 2 1 1 1 3 1 1 1 7 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00321 Chy_Chr09 FPKM 12.577645 13.9929 13.668777 12.743452 2.562147 1.202069 2.587641 2.361335 1.865472 2.74413