Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00326 ATGGCGAGGATTTGGGTTGCTTTTGCTCTTGTTTTTCTTCTTCTGTTTGGTGGGGTTTCTTCTGTTTCAGCCACGCCTCCTGCAAAAATTGTACGAGGGGTTCTCTCGAATGTGGTTTCTTCTCTTGTGAAGAAGTTGTGGTCGATGAAATCCAGCGCCAAAACTGCTGTTTCTAGCCGTTCGATGATGAAATTTGAGAGTGGATATACGGTTGAGACGGTGTTTGATGGTAGTAAGCTGGGAATCGATCCATATTCAGTTGAGATGTCGCCTAGTGGGGAGCTTCTGATCTTAGATGCTGAAAACAGTAATATTCATAAGATCTCAATGCCGTTGTCTCGATTTAGCATGCCTAAGCTGGTTTCGGGATCAGCAGAAGGATACTCTGGACATGTCGATGGTCATTCAAGAGAAGCGAGAATGAACCATCCGAAAGGTCTTACTTTAGATGAAAGGGGAAATATATACATTGCAGATACAATGAATATGGCTATCAGAAAGATTAGTGACACAGGGGTTACAACGATTGCTGGTGGAAGATGGAACCAAGGGAGTGGTCATATTGATGGTCCAAGTGAAGATGCAAAGTTCTCAAATGATTTCGATGTCGTTTATGTGGGAAGTAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACAAGGCAATTCGAGAGATTGAACTCAACTACGACGACTGCAATACCCAATATGCTGATAGTCTCAACTTGGGGGTAGTATTGCTGGTTGCTGCCGGTCTATTCGGTTACCTTCTTGCTTTGCTCCAACGTAGGGTGCAAGCTATGTTTTCTTCACACAAGGATCAGGATATAAGAAGTCAGCAAATGATGAAAGCTACACCAGTTGCCCCATACCAAAGACCTCCTCTGAAGTCAGTGAGGCCCTCCTTGATTCCAAGTGAAGATGAACCAGAGAAACTGGAGGAAGGCTTCTTTGGTTCTCTCGGGAGGCTTTTTGTCAACAGCAGCTCATCTATGGCCGATATCTTTGGGGGATTGCTGTCTGGATTTCGAAGGAAGCCTCTTAATCACCAGATTCATCAGCAGTTTCAGCCAGTTAATAGACATCCAAATGCTTGGCCCTTGCAAGAAAGCTTTGTGATTCCAGATGAAGACGAGCCACCATCCATCGAAACAAAAACTCCCACAATAAAGAAAACCTATCCGTTCATGACTCAAGATCTCGATCGATCTCACCAGTTCAAGCCAAACAGGAGTTACTTTAGTGGGTGGGATGCAGGTCCAACGACCTACTACGAGAAGAGTTGCGAAACAAATGAAATTGTGTTTGGTGCAGTTCAGGAGCAAGATGGACGTCGTGAAGCTATGGTCATCAAAGCTGTTGATTATGGAGATCCGAGATATAACCATCACAACATTCGAGCTCGATACAACTATACTGGTAACCCCAACTCTTATTGA 1437 44.19 MARIWVAFALVFLLLFGGVSSVSATPPAKIVRGVLSNVVSSLVKKLWSMKSSAKTAVSSRSMMKFESGYTVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKISMPLSRFSMPKLVSGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGGRWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADSLNLGVVLLVAAGLFGYLLALLQRRVQAMFSSHKDQDIRSQQMMKATPVAPYQRPPLKSVRPSLIPSEDEPEKLEEGFFGSLGRLFVNSSSSMADIFGGLLSGFRRKPLNHQIHQQFQPVNRHPNAWPLQESFVIPDEDEPPSIETKTPTIKKTYPFMTQDLDRSHQFKPNRSYFSGWDAGPTTYYEKSCETNEIVFGAVQEQDGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2816748 2819942 - Chy9G160420.1 Chy09g00326 233223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00326 478 SUPERFAMILY NHL repeat 70 227 - -
Chy09g00326 478 PANTHER - 1 418 - -
Chy09g00326 478 PANTHER - 419 477 - -
Chy09g00326 478 PANTHER POTASSIUM TRANSPORTER 1 418 - -
Chy09g00326 478 PANTHER POTASSIUM TRANSPORTER 419 477 - -
Chy09g00326 478 Gene3D - 38 226 IPR011042 -
Chy09g00326 478 MobiDBLite consensus disorder prediction 284 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00326 - - - csv:101209861 882.093
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy04g01476 Chy09g00326 CCT
Chy04g01476 Chy09g00326 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00015 Chy-Chr7:156085 Chy09g00326 Chy-Chr9:2816748 5.81E-76 dispersed
Chy07g00985 Chy-Chr7:14502319 Chy09g00326 Chy-Chr9:2816748 2.05E-33 dispersed
Chy04g01476 Chy-Chr4:21410807 Chy09g00326 Chy-Chr9:2816748 4.49E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g750 . . . . Bpe13g00490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0649 . . . . . . . . . . . . . . Cmo04g02846 . . . . . Cpe13g00910 . . . . . . . . . . . . . . . . . Chy09g00326 .
Vvi14g1388 . . . . . . . Bma13g00521 Cmo14g00646 . . Cma14g00636 . Car14g00579 Sed08g0617 Cpe03g00552 Cpe13g00910 Bhi06g00494 Tan11g0602 Cmetu09g1390 . . . Lcy10g1939 Cla10g01373 Cam10g1236 Cec10g1457 Cco10g1429 Clacu10g1432 Cmu10g2200 Cre10g1582 . . Cone2ag0142 Cone16ag0913 Lsi02g01553 Csa05g02912 Chy04g01476 Cme04g01909 . . . . Bpe09g00486 . . . . Cmo04g02849 Cmo15g00337 . Cma15g00325 Car04g02623 Car15g00310 . Cpe01g02359 Bhi11g01669 . . . Hepe02g1866 . . Cla09g01843 Cam09g1935 Cec09g2000 Cco09g2094 . . Cre01g0569 . Csa03g03913 Chy09g00326 Cme09g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005531 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 3 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00326 Chy_Chr09 FPKM 16.554285 16.790398 11.41796 11.513199 10.977136 7.935166 8.66587 140.299362 135.016068 143.707611