Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00328 ATGATGTCGGACGGTTTGATCTTCAACCGGTCTCCAGGTCATGCCAACATGTTGTTTTTCGGAAGTAGTGATTCCATTCCTCGTGGACCAAGTTTCATGATGGGGATGGAGGAAACTTCAAAGAGGCGCTCATTTTTCGGCTCTCCGGATGACTTGTTTGACGACGATTACTACGATGACCAGCCACCTGAGAAGAAGCGCAGGCTGACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCGAGGCAAGTGGCTGTGTGGTTTCAGAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTAAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCACGCTATGAATTCCGATCCGTTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACAGAGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAATGGAAGCGCTGTGCTGGACGAGGACGGTCCTCAACTCCTAGACAGTGGGGATTCATACATCTTGAGCAATAACTATGATGGCTGTGTTTTGCCAGCTTTTGGCGTGAACTCGGAGGAGGAAGATGTGAGTGACGACGGTCAGGGTTACTTCTCGGACGTTTATACTACAGTCGATCAGCAGACTCACGAGGGAGAGCCTCTGACCTGGTGGGACTGGACGTCGTAA 837 48.15 MMSDGLIFNRSPGHANMLFFGSSDSIPRGPSFMMGMEETSKRRSFFGSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFHAMNSDPFLEDQLLVPVVQQSIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYILSNNYDGCVLPAFGVNSEEEDVSDDGQGYFSDVYTTVDQQTHEGEPLTWWDWTS* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2838024 2839962 - Chy9G160440.1 Chy09g00328 233225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00328 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Chy09g00328 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Chy09g00328 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 261 - -
Chy09g00328 278 Coils Coil 140 167 - -
Chy09g00328 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Chy09g00328 278 SUPERFAMILY Homeodomain-like 49 122 IPR009057 -
Chy09g00328 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Chy09g00328 278 Gene3D - 58 126 - -
Chy09g00328 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Chy09g00328 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Chy09g00328 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Chy09g00328 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Chy09g00328 278 SMART HOX_1 63 124 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01468 Chy09g00328 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01276 Chy-Chr7:17481412 Chy09g00328 Chy-Chr9:2838024 7.04E-26 dispersed
Chy09g00265 Chy-Chr9:2206181 Chy09g00328 Chy-Chr9:2838024 4.78E-35 dispersed
Chy09g00328 Chy-Chr9:2838024 Chy12g01323 Chy-Chr12:17588638 1.06E-43 dispersed
Chy04g01468 Chy-Chr4:21334913 Chy09g00328 Chy-Chr9:2838024 9.97E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18464 PF00046 Homeodomain 3.50E-17 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00328 K09338 - csv:101210106 520.776