Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00330 ATGGCTGCCGTTCCTATTCCCACCCACATGAAGGCTTGGGTTTACCATGACTTTGGCAACACCCCAGATGTTCTTAAACTGGATTTCAATTACCCAGTTCCTCAAATCAATGAAAACCAGTTGCTCATCAAGGTTGTTGCTGCATCTTTGAATCCCATTGATTACAAGAGAATCCATGGAGCTTTGAAAGCTTTTAACTATTTCCCTCCGTCAATACCTGGCTATGATGTTGCTGGTGTGGTGGTGAAGGTGGGAAGTGAGGTGAAAAAATTCAAGGTAGGAGATGAAGTTTATGGAGATATAAACCATAAAGCATTGGATAAGCCAAAAAATGTTGGCACTTTGGCTGAGTACACTGCCACAGAAGAGAACGTTTTGGCACTGAAGCCTAAGAATCTGAGTTTCTTGGAGGCTGCTAGCCTTCCCCTTGCCATGGAAACTGCCTATGAAGGTCTTGAACGGGCCGGGCTTTCCCCTGGAAAATCGATTATTGTTTTGGGAGGTGCAGGGGGAGTCGGAGCTTTTATTATACAGCTTGCAAAGCATGTGTTTGGTGCATCAAAAGTAGTTGCTACTGCAAGCACAACAAAACAGGATCTCTTGAGAAGCTTAGGAGCTGATCAACCTATTGATTACACAAAGGAAAACTTTGAAGACCTTGATGAAAAATTCGATGTAGTCTACGACGCAGTCGGTCAGCCTGATAAAGCGGTTAAGGCGTTGAAAGAAGGCGGAAGTCTTGTGAGCATTGCTGCACCAGTTCCAGGGTTCCCGGATGCTTTCTTCCTCCTCACTTCAGATGCTGTCGTGTTGGAGAAACTAAATCCTTATCTGGAAAGTGGGAAGGTGAAACCGCTTATCGACCCCAAATCTCCATTCCCATTCTCTGATACCCTCGACGCATTCGCGTATCTCGAAACCTCCAGAGCTACTGGAAAAATTGTGATTTATCCCATCCCTTAG 963 45.07 MAAVPIPTHMKAWVYHDFGNTPDVLKLDFNYPVPQINENQLLIKVVAASLNPIDYKRIHGALKAFNYFPPSIPGYDVAGVVVKVGSEVKKFKVGDEVYGDINHKALDKPKNVGTLAEYTATEENVLALKPKNLSFLEAASLPLAMETAYEGLERAGLSPGKSIIVLGGAGGVGAFIIQLAKHVFGASKVVATASTTKQDLLRSLGADQPIDYTKENFEDLDEKFDVVYDAVGQPDKAVKALKEGGSLVSIAAPVPGFPDAFFLLTSDAVVLEKLNPYLESGKVKPLIDPKSPFPFSDTLDAFAYLETSRATGKIVIYPIP* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2865074 2867054 + Chy9G160460.1 Chy09g00330 233227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00330 320 Pfam Alcohol dehydrogenase GroES-like domain 39 101 IPR013154 -
Chy09g00330 320 SMART PKS_ER_names_mod 20 316 IPR020843 GO:0016491
Chy09g00330 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 320 IPR044626 GO:0016628
Chy09g00330 320 Gene3D - 152 267 - -
Chy09g00330 320 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 3 320 - -
Chy09g00330 320 Gene3D - 18 316 - -
Chy09g00330 320 Pfam Zinc-binding dehydrogenase 204 316 - -
Chy09g00330 320 SUPERFAMILY GroES-like 6 167 IPR011032 -
Chy09g00330 320 CDD MDR_like_2 10 316 - -
Chy09g00330 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 287 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00330 K18980 EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105] - csv:101210358 614.764
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00330 Chy10g00906 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01403 Chy-Chr1:19207228 Chy09g00330 Chy-Chr9:2865074 7.35E-35 dispersed
Chy06g01171 Chy-Chr6:10398115 Chy09g00330 Chy-Chr9:2865074 7.50E-32 dispersed
Chy09g00330 Chy-Chr9:2865074 Chy12g00697 Chy-Chr12:10190679 1.14E-23 dispersed
Chy12g00892 Chy-Chr12:14301951 Chy09g00330 Chy-Chr9:2865074 2.71E-11 transposed
Chy10g00906 Chy-Chr10:14757977 Chy09g00330 Chy-Chr9:2865074 1.57E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003915 2 1 4 2 2 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 2 2 2 1 1 2 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00330 Chy_Chr09 FPKM 6.950081 7.345551 6.267164 5.358875 17.6397 17.114132 19.04446 4.594512 4.295005 4.671961