Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00338 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCGTACATGTCAGGGGGATCTTGTCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAGGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCGGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAATTGGCTCATGGACATGCTCCATTTTCAAAATACCCACCGATGAAAGTTTTGCTAATGACACTACAAAATGCTCCGCCTGGTCTTGACTATGAAAGAGATAGGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGTTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAACACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAAGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAGTCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCTTTACCACGTCATTATATGTCAGAGAATAAGAGATCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTATCTCCTAAAAAGATTACTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGCAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGACGATGCATCAGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACATCTCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATTGTTCAACGGGAAGAAATTCTTAAACTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGCATCAGAGTCGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGTTTCTGTTTTCCTTTTCTTCTTATAACGATACGTCAAACCGAACCTACAATATTACCATTCTTGCATCCACGACCTGTGGCCATGTCGCTTGGGCTCGGTGCATAA 2025 42.52 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKITVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVDDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTGKNPDASESVTSDLLQVPPTSLRERELQSQVVHLQQSFCFPFLLITIRQTEPTILPFLHPRPVAMSLGLGA* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2955913 2964998 + Chy9G160540.1 Chy09g00338 233235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00338 674 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00338 674 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 640 - -
Chy09g00338 674 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Chy09g00338 674 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 640 - -
Chy09g00338 674 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00338 674 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00338 674 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Chy09g00338 674 CDD STKc_OSR1_SPAK 14 277 - -
Chy09g00338 674 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Chy09g00338 674 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Chy09g00338 674 MobiDBLite consensus disorder prediction 449 464 - -
Chy09g00338 674 MobiDBLite consensus disorder prediction 437 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00338 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1283.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01331 Chy-Chr4:19856048 Chy09g00338 Chy-Chr9:2955913 0 dispersed
Chy05g00345 Chy-Chr5:3557828 Chy09g00338 Chy-Chr9:2955913 1.67E-48 dispersed
Chy06g02217 Chy-Chr6:26332925 Chy09g00338 Chy-Chr9:2955913 0 dispersed
Chy07g00059 Chy-Chr7:518162 Chy09g00338 Chy-Chr9:2955913 3.02E-70 dispersed
Chy09g00338 Chy-Chr9:2955913 Chy04g01198 Chy-Chr4:18401444 4.39E-43 dispersed
Chy09g00338 Chy-Chr9:2955913 Chy06g00495 Chy-Chr6:3358171 1.85E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02836 . . . . . Cpe13g00900 . . . . . . . . . . . . . . . . . Chy09g00338 .
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00059 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 4.5e-223 771.2
Chy07g00059 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.8 7.7e-231 797.0
Chy07g00059 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Chy09g00338 . 1 641 MAP Kinase Kinase Kinase Kinase AT5G14720 68.3 1.3e-251 865.9
Chy06g02217 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 8.9e-246 846.7
Chy06g02217 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.0 2.2e-246 848.6
Chy09g00338 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.3e-149 526.9
Chy04g01331 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 1.6e-131 466.8
Chy06g02217 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 9.0e-119 424.5
Chy04g01331 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 2.3e-216 748.8
Chy09g00338 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.6e-103 371.7
Chy04g01331 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 2.5e-87 319.7
Chy06g02217 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 4.9e-75 278.9
Chy06g00495 CCT 32 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 7.5e-140 494.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71458 PF00069 Pkinase 4.30E-60 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00338 Chy_Chr09 FPKM 1.558933 1.849798 1.098287 1.628037 2.326086 2.850257 1.82392 4.886564 5.795839 4.236711