Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00375 ATGGGGGCCAAAAGTTCAAAGGAGGCCTCGCCGTATCGTTCAACTTCTTCTTCCTCGTGGGGTGGTGGTGGGTATGCTCAATCGTCATATGGACATGAGACGCCAAGTTATGTGCCTCAGCAATCCTATCCCTCTCAGCAGTATTATACATCCTCTCAAGAGTGCTATGGGAATGTTGATAATGGCAGGAGGTTGGATAGAAGATACTCGCGGATTGCTGATAATTACAATTCTTTAGAAGAGGTAACAGAAGCTCTTGCACGTGCTGGCCTTGAGTCTTCCAATCTTATTGTTGGCATTGATTTCACCAAGAGCAATGAGTGGACAGGCGCAAGGTCGTTTAATAGACGAAGTCTACATCACATTGGAGACCAGCCAAATCCTTATCAACAGGCAATATCAATTATTGGAAAGACATTAGCTGCTTTTGATGATGACAACTTAATTCCCTGCTTTGGGTTTGGAGATGCGTCAACTCATGATCAAGACGTCTTCAGTTTCTTCCCAGAAGAGGAGAGGTTTTGCAATGGATTTGAAGAAGTATTAAGTCGTTATCAAGAAATTGCCCCACATCTACGACTTGCAGGTCCAACTTCATTTGCACCTGTTATTGAAATGGCCATGACCATTGTCGAGCAGAGTGGTGGCCAGTACCATGTTTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGTGTAGATACAGAACGTGGGAGGCTTAGTCCACAGGAACAGAAGACTGTTGATGCCATTGTTGAAGCAAGCAAGTTCCCTCTCTCAATTGTTTTAGTTGGAGTTGGAGATGGCCCCTGGGATATGATGAGAGAATTTGATGACAATATCCCATCGCGTGCATTTGATAATTTTCAGTTTGTAAATTTCACAGAAATTATGTCAAAGAATATACCCACATCTCGGAAAGAAACCGAGTTTGCTCTTGCAGCATTAATGGAGATTCCTTCCCAGTACAAAGCTACAATAGAACTTGATATTTTGGGTGGTCGCAAGGGTGTATCTCCTCTGAGAGTTGCACTTCCTCCACCAGTCTACGGTGCAGCTTCTCTTAATAGTTCAAAATCTTTTAGTAATTCAAAGCCTACCTGGTCTTCCAGTTATGAGCCAAGTGTGCCTTCTTTCCCTGTAAACAGAAATCCTACTCCTACTAGTACAGCACCTCCTGTAGCAAGCTCAACTTATGACAATCAGGTCTGCCCCATTTGCCTGACCAATCCAAAGGACATGGCTTTTGGCTGTGGACACCAGACGTGTTGTGAATGTGGACAAGATCTCCAGACATGTCCGATATGCAGGAGCACCATTCACACCAGGATAAAGCTCTACTGA 1344 43.97 MGAKSSKEASPYRSTSSSSWGGGGYAQSSYGHETPSYVPQQSYPSQQYYTSSQECYGNVDNGRRLDRRYSRIADNYNSLEEVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDQPNPYQQAISIIGKTLAAFDDDNLIPCFGFGDASTHDQDVFSFFPEEERFCNGFEEVLSRYQEIAPHLRLAGPTSFAPVIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTERGRLSPQEQKTVDAIVEASKFPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMSKNIPTSRKETEFALAALMEIPSQYKATIELDILGGRKGVSPLRVALPPPVYGAASLNSSKSFSNSKPTWSSSYEPSVPSFPVNRNPTPTSTAPPVASSTYDNQVCPICLTNPKDMAFGCGHQTCCECGQDLQTCPICRSTIHTRIKLY* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3282955 3287497 - Chy9G160910.1 Chy09g00375 233272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00375 447 PANTHER RING-FINGER PROTEIN 1 447 - -
Chy09g00375 447 SUPERFAMILY RING/U-box 398 443 - -
Chy09g00375 447 MobiDBLite consensus disorder prediction 369 394 - -
Chy09g00375 447 Pfam Zinc finger, C3HC4 type (RING finger) 401 441 - -
Chy09g00375 447 MobiDBLite consensus disorder prediction 1 43 - -
Chy09g00375 447 SMART VWA_4 93 297 IPR002035 -
Chy09g00375 447 PANTHER COPINE FAMILY PROTEIN 1 1 447 - -
Chy09g00375 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 447 IPR013083 -
Chy09g00375 447 ProSiteProfiles Zinc finger RING-type profile. 404 437 IPR001841 -
Chy09g00375 447 CDD RING-HC_RGLG_plant 403 447 IPR045317 GO:0061630|GO:0070534
Chy09g00375 447 Pfam Copine 118 332 IPR010734 -
Chy09g00375 447 MobiDBLite consensus disorder prediction 8 43 - -
Chy09g00375 447 SUPERFAMILY vWA-like 94 278 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00375 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101219488 852.818
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00375 Chy10g00832 CCT
Chy09g00375 Chy10g00832 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00484 Chy-Chr2:2966940 Chy09g00375 Chy-Chr9:3282955 3.89E-150 dispersed
Chy09g00375 Chy-Chr9:3282955 Chy10g00832 Chy-Chr10:14255706 0 dispersed
Chy02g01094 Chy-Chr2:7703778 Chy09g00375 Chy-Chr9:3282955 8.86E-150 transposed
Chy05g00827 Chy-Chr5:11865881 Chy09g00375 Chy-Chr9:3282955 5.43E-22 transposed
Chy02g02625 Chy-Chr2:29377124 Chy09g00375 Chy-Chr9:3282955 0 wgd
Chy04g01413 Chy-Chr4:20787353 Chy09g00375 Chy-Chr9:3282955 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00375 Chy_Chr09 FPKM 90.602982 94.307076 58.35743 59.611927 68.377655 65.58712 68.807915 81.064545 78.795891 80.274979