Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00385 ATGGCCCGTCAATTCGTTCTCCTCGCCCTTCTCTTCTCCTCCGCCGTCGTCGGCATTGTCTCTGCCGCCGAAGCCCCCGCCGCCTCCCCCGCCACCTCCCCTGCTTCCTCCCCTAAGGCCGCTGACGTTGAACCCTCCGATGGCGGAAAAACTCCTGCAGCCGCTCCTTCCAAGTCTCCCGCCGCAGCCGCTGGCGCCCCCATCGCTGCCACTCCTTCCGCTGCCGGTGCTCCCAAAGGAGCTGCTTCTGCCCCTTCAGCCAAGGCTGGAGCCCCTGAAGCTGACACCCCTGTTGCCGGTGGCCCTGCTTCTTCCCCTGCTGGCGATGAGTCTTCTTCCACTGTGGCCCCTGCTGGAGCACCTGAAGCCGATGCCGATGTGTCATCTCCACCTTCCCCAACTGGACCTGCTGCCGGACCTGCAAGCGATGCCGTTGCTGATGCACCAGCTGATTCACCAGCTGATACACCCTCAGATTCTCCGGCCAATGGTGGTTCTTTGGTGAAAGTGTCTGTTGCGGCCGTTGCTGGGATTTCGGGCATTGTTGGATTGAGCATAAATGGATCAAGAAGAAACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACGAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACCGACTCCGGGAACGACGACCCACTGAACCCCCGTCCGGGCACTCTCCGCCACGCCGTCATCCAAAACGAACCCTTATGGATCATCTTCAAGCGCGACATGGTAATCAAACTCGCCCAAGAACTGGTCATGAACTCCTTCAAAACCATCGACGGACGTGGCGCCAGCGTCCACTTGGCAGGTGGCCCTTGTATTAAAATCCACTACGCCACAAATATAATCATCCACGGCATCCATATTCACGATTGCAAGAGAGGTGGGAATGCCAACATACGAGACTCCCCACAGCATGCTGGCTGGTGGACTGCATCTGACGGTGATGGTGTCTCAATTTTAGGTGGTAAACAAATCTGGATCGATCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGACGCCATTCATGGATCAACGGCTATTACTATATCCAATAACTATATGACACATCATGATAAGGTTATGTTATTGGGACATAGTGATTCTTTCACCCAAGATAAAAATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTTGTCCAACGAATGCCAAGATGTAGACATGGATATTTCCATGTAGTGAACAACGATTACACTCATTGGGAAATGTATGCCATCGGAGGGAGTGCTTCGCCCACGATATACAGCCAAGGCAATAGATTCGTGGCACCTTATAATCGATTTCGAAAGGAGGTGACAAAGCACGAGGACGCACCCGAGAGCGAGTGGCGCCATTGGAACTGGCGTTCTGAGGGTGACTTGTTGTTGAATGGCGCCTATTTTCGCCAGTCAGGCGCGGGTGCCTCCTCTAGCTATGCACGAGCTTATAGTCTCAGTGCTAGACCCTCGTCTCTTGTTGGGGATATCACTATTACTGCGGGTGCTCTCAATTGTCGCAGAGGTTCTCGTTGCTAA 1653 52.81 MARQFVLLALLFSSAVVGIVSAAEAPAASPATSPASSPKAADVEPSDGGKTPAAAPSKSPAAAAGAPIAATPSAAGAPKGAASAPSAKAGAPEADTPVAGGPASSPAGDESSSTVAPAGAPEADADVSSPPSPTGPAAGPASDAVADAPADSPADTPSDSPANGGSLVKVSVAAVAGISGIVGLSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIKLAQELVMNSFKTIDGRGASVHLAGGPCIKIHYATNIIIHGIHIHDCKRGGNANIRDSPQHAGWWTASDGDGVSILGGKQIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFVAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDLLLNGAYFRQSGAGASSSYARAYSLSARPSSLVGDITITAGALNCRRGSRC* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3383806 3388856 + Chy9G161010.1 Chy09g00385 233282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00385 550 PANTHER PECTATE LYASE 184 547 - -
Chy09g00385 550 PANTHER PECTATE LYASE 18-RELATED 184 547 IPR045032 GO:0030570
Chy09g00385 550 Gene3D - 201 543 IPR012334 -
Chy09g00385 550 Pfam Pectate lyase 285 467 IPR002022 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 248 273 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 521 544 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 492 516 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 348 369 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 224 241 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 284 300 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 428 447 IPR018082 -
Chy09g00385 550 PRINTS Pollen allergen Amb family signature 450 469 IPR018082 -
Chy09g00385 550 SMART amb_all 276 473 IPR002022 -
Chy09g00385 550 SUPERFAMILY Pectin lyase-like 183 544 IPR011050 -
Chy09g00385 550 MobiDBLite consensus disorder prediction 26 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01694 Chy-Chr3:18585075 Chy09g00385 Chy-Chr9:3383806 0 dispersed
Chy06g01493 Chy-Chr6:16258421 Chy09g00385 Chy-Chr9:3383806 3.29E-06 dispersed
Chy09g00385 Chy-Chr9:3383806 Chy10g01285 Chy-Chr10:17374876 3.52E-175 dispersed
Chy09g00385 Chy-Chr9:3383806 Chy12g01211 Chy-Chr12:16852088 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00385 K01728 - csv:101217834 766.148