Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00397 ATGGTGCCAACTATTTCCACAATCTTTCTCATCTCATTCTCTAATTTCTTGCTAACAATGTCGTTACCAATTGAAAGCAGAGGGCTGATCAGAGGTCTTTACGGCGCCGGACCATGGCACAAAGCTCATGCTACTTTCTACGGCGGAAATGACGCTGCCGGCACAATGGGCGGCGCGTGTGGTTACGGCAACTTGTACAGCCAAGGCTATGGCGTGAACACGGCGGCGCTCAGCACAGCCCTGTTCAACGATGGATACAGCTGCGGAGCTTGTTTCGAGATCAAGTGTGTTAATGACCCGCAATGGTGCCACGCCGGTAACCCTTCTATTTTTGTGACGGCCACCAATTTTTGTCCTCCCAATTATGCTCTGCCTAATGACAATGGTGGATGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTGAAGATTGCCCAATACCGTGCCGGTATTGTTCCCGTCTCCTTTCGCAGAGTGGCATGTCGGAGGGAGGGAGGAATGAGGTTTACGATCAACGGATTCAAATACTTCAATTTAGTATTGATAACCAACGTGGCAGGCGCAGGGGATATTGTGAGTGTGAGTATCAAAGGGTCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAATCAAACACCGTTTTGGTGGGTCAGTCACTTTCGTTTAGGGTTAAGAGCAGTGATAATCGGATTTCAACTTCTTCCAATATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCACCGGCGAAAACTTCTAA 792 48.86 MVPTISTIFLISFSNFLLTMSLPIESRGLIRGLYGAGPWHKAHATFYGGNDAAGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVAGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFRVKSSDNRISTSSNIVPSHWQFGQTFTGENF* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3497307 3498298 + Chy9G161130.1 Chy09g00397 233294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00397 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Chy09g00397 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Chy09g00397 263 SMART dpbb_1 74 161 IPR007112 -
Chy09g00397 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Chy09g00397 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Chy09g00397 263 Gene3D - 32 167 IPR036908 -
Chy09g00397 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
Chy09g00397 263 PANTHER EXPANSIN-A6 20 263 - -
Chy09g00397 263 Gene3D - 172 263 IPR036749 -
Chy09g00397 263 PANTHER EXPANSIN-A15 20 263 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Chy09g00397 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Chy09g00397 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Chy09g00397 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00932 Chy-Chr7:13528375 Chy09g00397 Chy-Chr9:3497307 4.48E-53 dispersed
Chy08g00748 Chy-Chr8:15209147 Chy09g00397 Chy-Chr9:3497307 5.11E-134 dispersed
Chy09g00397 Chy-Chr9:3497307 Chy10g00538 Chy-Chr10:11972620 6.14E-152 dispersed
Chy11g00820 Chy-Chr11:11728656 Chy09g00397 Chy-Chr9:3497307 4.71E-78 dispersed
Chy09g00397 Chy-Chr9:3497307 Chy11g01222 Chy-Chr11:18396907 2.55E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00397 - - csv:101216168 494.582