Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00416 ATGGTTCGAACTTTCTTACAGAAAGTGGGAAGAAGACTGATATTTGGAAAAGGCTATCAGCTGAAGGATGTGAATACAGATGAGAAACGGAAGAAAATAAGAAAATTTAAGGAGTCAGCCTGGAAATGTATTTACTTTCTTTCTGCAGAGTTGTTGGCTCTATCTGTTACATATAACGAGCCTTGGTTTACTAGCACAAAACATTTTTGGGTAGGACCAGGAGAACAGATCTGGCCTGATCAAAGAGCTAAGTTGAAATTGAAGGGATTATATATGTATGCTGCTGGATTTTATACGTACTCCATATTTGCCTTGATTTTTTGGGAAACAAGACGTTCAGACTTTGGGGTGTCCATGAGCCACCATGTGGCAACTCTCATTCTCATCGTACTTTCCTACATTTTTAGATTTGCTCGTGTTGGTTCTGTGGTTCTTGCACTTCATGATGCAAATGATGTGTTTCTGGAGATAGGAAAGATGTCCAAATATAGTGGCGCTGAGATGTTGGCTAGCATTGCATTTGTAGTCTTTGTTTTGTCTTGGTTATTGTTACGTCTCATCTACTATCCATTTTGGATCCTTCGGAGTACAAGCTATGAAGTACTCCTTGTATTGGACAAGAACAAACATCCAGTTGATGGACCAATCTACTATTATGTGTTCAATACTCTTCTATTTTGCCTTTTAGTTCTTCACATATATTGGTGGGTGTTAATTTACCGAATGCTTGTTAAACAAATCCAAGCTAGAGGACAGATTAGTGAAGATGTTCGTTCAGGTAAATATCCGCTCGCTGTAAATGACATGTGTTCACCACAACAACTTGACACCAACCGGAAGTTTCCTATTGCGGAATCAAATCTCCCCTCCCACCGCCTCTCCTCCGGTTGGAAAATGGAAGATGTTCTAACGGAGATTCCCCCTCCTTCAAGGTTTTTCCAAGATGATATTAATAATTTTGCTCCTGCATCACCATGTCTTCCTTCCCCATTTCTTTTGTTTCCCAAATCTAAGCCTAATGAACCTATCCGCCCTTCCCTGCTTGTCATTGCCATTTCTTCTCCTTCTCTGCATCTTTTCCATCATTTATCTGCTAAAACCCTTATTGGAAGTCTCATCCTACCTGAAATTCCTTTCTCTGGAAACCATATCCAGCCGTCGGTTGATGACAAATCTTGCAACATTTACTCCATTGATCAAGATAATGAACTCATTATTCTTGTCTCCGTTCAGTTTTCTGTTCCTGCAGAGAGATCTCTCCTTGTTGCAAAGCTACTACTTGATCATAAAATAATTCCTGAGAGGGTTCTGATCTTAGATAGTCTTCAGAGCCAAAATTTTAGGGGGAAGCTCTCGCCTGATGAGACTTTTGCTTTCAAGTTGGAGACCTCTTCTGAAAGAAAGAGTAACGATGAGGGTAATGATGGTTCACAAATGTTAAAAGGCCTGGATTATTATCCATCAGGAAGTGTTGTAGATGGCTTGGCTGCTGCTTTGCTTGGACGTTGTCAGATGAAGAATATCAAGGGAGCACTCTGTGTTTCATGGCCTGAATATGGAAGCGAGGTGGTATCTCTGCTCAAATCTTTGCTTCACCAAAATGCACTATTGCAACCAATATTAGAATTTTGCACTGAAAGTAATAATGGGGATGAGTATGTGAACCGGATTAAGGACCTCGATTTATACACCTGA 1695 40.29 MVRTFLQKVGRRLIFGKGYQLKDVNTDEKRKKIRKFKESAWKCIYFLSAELLALSVTYNEPWFTSTKHFWVGPGEQIWPDQRAKLKLKGLYMYAAGFYTYSIFALIFWETRRSDFGVSMSHHVATLILIVLSYIFRFARVGSVVLALHDANDVFLEIGKMSKYSGAEMLASIAFVVFVLSWLLLRLIYYPFWILRSTSYEVLLVLDKNKHPVDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQIQARGQISEDVRSGKYPLAVNDMCSPQQLDTNRKFPIAESNLPSHRLSSGWKMEDVLTEIPPPSRFFQDDINNFAPASPCLPSPFLLFPKSKPNEPIRPSLLVIAISSPSLHLFHHLSAKTLIGSLILPEIPFSGNHIQPSVDDKSCNIYSIDQDNELIILVSVQFSVPAERSLLVAKLLLDHKIIPERVLILDSLQSQNFRGKLSPDETFAFKLETSSERKSNDEGNDGSQMLKGLDYYPSGSVVDGLAAALLGRCQMKNIKGALCVSWPEYGSEVVSLLKSLLHQNALLQPILEFCTESNNGDEYVNRIKDLDLYT* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3651722 3657216 - Chy9G161320.1 Chy09g00416 233313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00416 564 ProSiteProfiles TLC domain profile. 34 248 IPR006634 GO:0016021
Chy09g00416 564 PANTHER LONGEVITY ASSURANCE FACTOR 1 LAG1 3 260 IPR016439 GO:0046513|GO:0050291
Chy09g00416 564 Pfam TLC domain 35 241 IPR006634 GO:0016021
Chy09g00416 564 PANTHER LAG1 LONGEVITY ASSURANCE HOMOLOG 3 3 260 - -
Chy09g00416 564 SMART lag1_27 34 248 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00416 - - - csv:101216753 516.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00051 Chy-Chr1:372644 Chy09g00416 Chy-Chr9:3651722 1.29E-74 dispersed
Chy09g00416 Chy-Chr9:3651722 Chy11g00396 Chy-Chr11:3748521 3.57E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1033 . . . . . . . . . . . . . . . . Cpe01g01901 . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01495 . . . . . . Cmo04g02291 Cmo15g00872 Cma04g02191 Cma15g00840 Car04g02117 Car15g00791 . . Bhi12g01045 . . . . . . Cla01g00724 Cam01g0751 Cec01g0750 Cco01g0776 Clacu01g0743 Cmu01g0712 Cre09g1794 Lsi09g00784 Csa05g01365 Chy09g00416 Cme09g01204
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013450 1 2 0 0 1 0 2 1 1 1 0 0 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00416 Chy_Chr09 FPKM 6.809096 8.045523 20.816143 21.441256 5.715452 6.400177 6.290844 58.967995 52.985641 57.052193